RNA id: TU640637


Basic Information

Item Value
RNA id TU640637
length 812
RNA type TUCP
GC content 0.57
exon number 6
gene id LOC118936669
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 97679917 ~ 97796621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTGGAAGGAGGTCGAACAGCAGAGAGACTCATTCACTGAGGAATACTGAGGACAATGATCCCAGGATACACTACTACAGAGGACATACTGCATACACTATGgacTCTGAATCTCTGGACAGTTGTATCCAGAGCACCCTCTCAGCCCTCTACCCTCCGTTTGATGCCACAGCCTCCACAGTGCTGTGTCAGGTTTTTGATGTGGTGGAGACCAGCTACAGAGGAGACGGATTAAGATACCTTATAGACTTCCTGGTCCCTGCCAAACACATCCTGCAGACCATCCAGCAACATGCCTGTTTCCCGTACTGCGGCCTGTTATTCCGGCACCAGGGCTGGCCTCTGTGTCTCCACGACAAGGTGATCATCCAGCTCTCTCCTCTGGACCCACGTGTCCTCCGCCCCGGGGACTTCTACCTACAGGTGGCAtcgccctctgtctcccccagcTCCTCCTCCACCAACACCCCCAGcCCACCCTGTCTCATCCTGCGCTGTCTGGCCCCCAGTGGGCAGCATGTAGAGGAGGTAAAGTTACCAGAGCTAGCCTACACCTCCCTGTTCACCATGGCTTGGCTCCACTCAGTCAACAGGGAACGGAGTGGAGCAGGAACGGAGACAGGGTCTGGGACAGGGTCGGAGACAGGGTCTGGGACAGGGTCTGGGACAGGGTCGGGGACAGGGTCGGGGAGGACACTGTCCCACTGCCTCCTTTCTGCAGAGAACGACATCTTCAGAGTACCCTGGGAGGATGTAGTACACCCTCAGTTCATTAACAGACCCACGGCTATGGTGGCTGCACCTATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU640655 lncRNA upstream 16991 97723389 ~ 97725161 (+) True G563516
TU640629 lncRNA upstream 60066 97681571 ~ 97682086 (+) True G563495
TU640476 lncRNA upstream 69101 97607635 ~ 97673051 (+) True G563412
TU640604 lncRNA upstream 118528 97623185 ~ 97623624 (+) True G563483
TU640597 lncRNA upstream 130247 97610162 ~ 97611905 (+) True G563477
TU640706 lncRNA downstream 4149 97799775 ~ 97801279 (+) True G563544
TU640708 lncRNA downstream 8133 97803759 ~ 97804829 (+) False G563546
TU640709 lncRNA downstream 8133 97803759 ~ 97804615 (+) True G563546
TU640712 lncRNA downstream 19580 97815206 ~ 97815620 (+) True G563549
TU640713 lncRNA downstream 25959 97821585 ~ 97821831 (+) True G563550
XM_036981685.1 mRNA upstream 71861 97536534 ~ 97670291 (+) True LOC110513174
XM_036981678.1 mRNA upstream 212248 97369711 ~ 97529904 (+) False LOC110516620
XR_005052365.1 mRNA upstream 389292 97350505 ~ 97352860 (+) False LOC118965002
XR_005052366.1 mRNA upstream 389292 97352086 ~ 97352860 (+) False LOC118965002
XM_036981677.1 mRNA upstream 727884 96997013 ~ 97014268 (+) True LOC110507008
XM_036981686.1 mRNA downstream 2033 97797659 ~ 97943775 (+) True plekhg4
XR_005052367.1 mRNA downstream 148630 97944256 ~ 97947528 (+) False LOC118965004
XR_005052368.1 mRNA downstream 148630 97944256 ~ 97947528 (+) False LOC118965004
XR_005052369.1 mRNA downstream 148630 97944256 ~ 97947528 (+) True LOC118965004
XM_036981693.1 mRNA downstream 408745 98204371 ~ 98206233 (+) True LOC118965006
TU640468 other upstream 229312 97508289 ~ 97512840 (+) True LOC110516620
TU639398 other upstream 1254927 96481834 ~ 96487225 (+) True G562740
TU639369 other upstream 1354212 96384736 ~ 96387940 (+) False G562719
TU639366 other upstream 1354212 96385976 ~ 96387940 (+) False G562719
TU638900 other upstream 1729904 95996318 ~ 96012248 (+) True LOC118965000
TU640763 other downstream 127005 97922631 ~ 97923034 (+) True G563588
TU640776 other downstream 154447 97950073 ~ 97951916 (+) False G563596
TU641659 other downstream 684954 98480580 ~ 98483302 (+) True G564164
TU642010 other downstream 1004884 98800510 ~ 98824338 (+) False LOC110526849
TU642007 other downstream 1175516 98971142 ~ 98983410 (+) False LOC110526849

Expression Profile

TU640637 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU640637 Expression in each Bioproject

Bar chart with 18 bars.
TU640637 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.