RNA id: TU526511


Basic Information

Item Value
RNA id TU526511
length 344
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G463823
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 279286 ~ 279902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagcctagtggttagagtgttgggccagtaaccagcaggtagcctagtggttagagtgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagtgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagcgttgggccagtaaccagcaggtagcctagtggttagagtgttgggccagtaaccagcaggtagcctagtggttagagtgttggactagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526510 lncRNA upstream 309 278364 ~ 278977 (+) False G463822
TU526509 lncRNA upstream 309 278592 ~ 278977 (+) True G463822
TU526478 lncRNA upstream 27027 251401 ~ 252259 (+) True G463805
TU526467 lncRNA upstream 35315 243721 ~ 243971 (+) True G463798
TU526449 lncRNA upstream 69272 209366 ~ 210014 (+) True G463786
TU526516 lncRNA downstream 9031 288933 ~ 289261 (+) True G463828
TU526517 lncRNA downstream 10764 290666 ~ 291834 (+) True G463829
TU526557 lncRNA downstream 35428 315330 ~ 316561 (+) True G463849
TU526559 lncRNA downstream 42857 322759 ~ 328447 (+) True G463850
TU526572 lncRNA downstream 59296 339198 ~ 340053 (+) True G463861
XM_036979169.1 mRNA upstream 203422 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 203422 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 230285 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 230459 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 162814 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 176718 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 263202 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 263520 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 271879 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 11135 265409 ~ 268151 (+) False G463813
TU526495 other upstream 11135 265409 ~ 268151 (+) True G463813
TU526352 other upstream 226796 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 228411 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 176931 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 948803 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1782426 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 2119859 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 2125217 2405119 ~ 2406090 (+) True G465355

Expression Profile