RNA id: TU526572


Basic Information

Item Value
RNA id TU526572
length 635
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G463861
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 339198 ~ 340053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAACATCACCTACAGTCTCCACTGCAGCCTGTCACAAAACATGTGCCTTTCACTACAACCAATACCATAGGCATCCATCTcttgtattgctaccatgttgttgtcatgttgtgttgctaccatgttgttgttatgttgtgttgctaccatgttgttgtcatgttgtattgctatcatgttgtgttgctaccatgttgttgtcatgttgtggtgctaccatgttgttgtcatgttgtattgctatcatgttgtgttgctaccatgttgttgtcatgttgtgttgctaccatgttgttgtcatgttgtggtgctaccatgttgttgtcatgttgtggtgctaccatgttgtcatgttgtgttgctaccatgttgttgtcatgttgtggtgctaccatgttgtgttgctgctatgttgtctctggtcatggttttaaaagatCACTgaagtatcaactttgctgtgggTCCATGGAAGCTGCAGTATTGAAATATAATTGTAACATGGTCTGAGAAAAACAATATTGGAAGGCCAATTCAAGCATTGTCTAACATGACTAGTATTTTTGAAAAGCAATTTTACCAGTTTTATGGTAAAGAGAATTTGGTGTAATGTGCATGGCCTTCTACATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526559 lncRNA upstream 10751 322759 ~ 328447 (+) True G463850
TU526557 lncRNA upstream 22637 315330 ~ 316561 (+) True G463849
TU526517 lncRNA upstream 47364 290666 ~ 291834 (+) True G463829
TU526516 lncRNA upstream 49937 288933 ~ 289261 (+) True G463828
TU526511 lncRNA upstream 59296 279286 ~ 279902 (+) True G463823
TU526541 lncRNA downstream 1721 341774 ~ 343592 (+) False G463835
TU526525 lncRNA downstream 1815 341868 ~ 343592 (+) False G463835
TU526530 lncRNA downstream 1815 341868 ~ 343298 (+) False G463835
TU526534 lncRNA downstream 1815 341868 ~ 342735 (+) False G463835
TU526537 lncRNA downstream 1815 341868 ~ 343298 (+) False G463835
XM_036979169.1 mRNA upstream 263334 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 263334 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 290197 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 290371 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 102663 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 116567 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 203051 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 203369 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 211728 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 71047 265409 ~ 268151 (+) False G463813
TU526495 other upstream 71047 265409 ~ 268151 (+) True G463813
TU526352 other upstream 286708 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 288323 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 116780 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 888652 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1722275 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 2059708 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 2065066 2405119 ~ 2406090 (+) True G465355

Expression Profile