RNA id: TU526596


Basic Information

Item Value
RNA id TU526596
length 209
lncRNA type intronic
GC content 0.45
exon number 1
gene id G463882
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 422893 ~ 423101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actggcagtgacagctggattaaagccccacattaaacccttccctactagcagttacagctggattaaagccccacattaaacccatctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagttatGAAtcgattaaagccccacattaaacccttctctactggcagtgacagctggattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526595 lncRNA upstream 809 421863 ~ 422084 (+) True G463881
TU526594 lncRNA upstream 4573 418112 ~ 418320 (+) True G463880
TU526593 lncRNA upstream 6943 415456 ~ 415950 (+) True G463879
TU526592 lncRNA upstream 8131 414534 ~ 414762 (+) True G463878
TU526574 lncRNA upstream 67318 354993 ~ 355575 (+) True G463863
TU526597 lncRNA downstream 1338 424439 ~ 424720 (+) True G463883
TU526599 lncRNA downstream 4466 427567 ~ 428566 (+) False G463884
TU526603 lncRNA downstream 4466 427567 ~ 428566 (+) True G463884
TU526609 lncRNA downstream 12052 435153 ~ 435427 (+) True G463889
TU526611 lncRNA downstream 13128 436229 ~ 436829 (+) True G463891
XM_036979169.1 mRNA upstream 347029 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 347029 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 373892 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 374066 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 19615 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 33519 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 120003 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 120321 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 128680 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 154742 265409 ~ 268151 (+) False G463813
TU526495 other upstream 154742 265409 ~ 268151 (+) True G463813
TU526352 other upstream 370403 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 372018 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 33732 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 805604 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1639227 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1976660 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1982018 2405119 ~ 2406090 (+) True G465355