RNA id: TU526597


Basic Information

Item Value
RNA id TU526597
length 282
lncRNA type intronic
GC content 0.46
exon number 1
gene id G463883
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 424439 ~ 424720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacattaaacccttctctactggcagtgacagctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacattaaacccttctctactggcagtgacagctggattaaagccccacattaaacccttctctactggcagttatgcatggattaaagccccacattaaacccttctctactggcagttacagctggattaaagccccacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526596 lncRNA upstream 1338 422893 ~ 423101 (+) True G463882
TU526595 lncRNA upstream 2355 421863 ~ 422084 (+) True G463881
TU526594 lncRNA upstream 6119 418112 ~ 418320 (+) True G463880
TU526593 lncRNA upstream 8489 415456 ~ 415950 (+) True G463879
TU526592 lncRNA upstream 9677 414534 ~ 414762 (+) True G463878
TU526599 lncRNA downstream 2847 427567 ~ 428566 (+) False G463884
TU526603 lncRNA downstream 2847 427567 ~ 428566 (+) True G463884
TU526609 lncRNA downstream 10433 435153 ~ 435427 (+) True G463889
TU526611 lncRNA downstream 11509 436229 ~ 436829 (+) True G463891
TU526612 lncRNA downstream 12164 436884 ~ 437163 (+) True G463892
XM_036979169.1 mRNA upstream 348575 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 348575 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 375438 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 375612 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 17996 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 31900 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 118384 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 118702 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 127061 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 156288 265409 ~ 268151 (+) False G463813
TU526495 other upstream 156288 265409 ~ 268151 (+) True G463813
TU526352 other upstream 371949 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 373564 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 32113 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 803985 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1637608 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1975041 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1980399 2405119 ~ 2406090 (+) True G465355

Expression Profile