RNA id: TU526609


Basic Information

Item Value
RNA id TU526609
length 275
lncRNA type intronic
GC content 0.50
exon number 1
gene id G463889
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 435153 ~ 435427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTGTAACATAAACTAGAAGAACAGATGGACCTCCTCACGGTACCTGAGACTAGAAGAACAGCTGGGCCTCCTCACGGTACCTGAGACTAGAAGAACAGATGGGCCTCCTCACGGTACCTGAGACTAGAAGAACAGATGGACCTCCTCATGGTACCTGAGACTAGAAAAACAGATGGACCTCATCACAGTACTTGGGACAAGACCAGATGGGCCTCCTCACGGTACCTAGAAGAACAGATGGACCTCCTCATGGTACCTGAGACTAGAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526599 lncRNA upstream 6587 427567 ~ 428566 (+) False G463884
TU526603 lncRNA upstream 6587 427567 ~ 428566 (+) True G463884
TU526597 lncRNA upstream 10433 424439 ~ 424720 (+) True G463883
TU526596 lncRNA upstream 12052 422893 ~ 423101 (+) True G463882
TU526595 lncRNA upstream 13069 421863 ~ 422084 (+) True G463881
TU526611 lncRNA downstream 802 436229 ~ 436829 (+) True G463891
TU526612 lncRNA downstream 1457 436884 ~ 437163 (+) True G463892
TU526614 lncRNA downstream 2222 437649 ~ 438321 (+) True G463894
TU526613 lncRNA downstream 3149 438576 ~ 438922 (+) True G463893
TU526902 lncRNA downstream 18890 454317 ~ 455090 (+) True G464092
XM_036979169.1 mRNA upstream 359289 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 359289 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 386152 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 386326 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 7289 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 21193 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 107677 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 107995 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 116354 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 167002 265409 ~ 268151 (+) False G463813
TU526495 other upstream 167002 265409 ~ 268151 (+) True G463813
TU526352 other upstream 382663 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 384278 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 21406 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 793278 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1626901 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1964334 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1969692 2405119 ~ 2406090 (+) True G465355

Expression Profile