RNA id: TU526612


Basic Information

Item Value
RNA id TU526612
length 280
lncRNA type intronic
GC content 0.43
exon number 1
gene id G463892
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 436884 ~ 437163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATGACCATCTCTCTGCAGACTGGACACCCAGGAAGCAGATTCTCAGTATGATGTATTACTGGACTATTGGCAGTCAGATGGCAATCCTAGAGAGAACTAGTATCACTACTGTAGTTTACAACTGGAGactagtggaggagagagaactaGTATCACTACTGTAGTTTACAACTGGAGactagtggaggagagagaactaGTATCACTACTGTAGTTTACAactagtctagtggaggagagagaactaGTAGCTGGTGGTGGTAATACACCATTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526611 lncRNA upstream 55 436229 ~ 436829 (+) True G463891
TU526609 lncRNA upstream 1457 435153 ~ 435427 (+) True G463889
TU526599 lncRNA upstream 8318 427567 ~ 428566 (+) False G463884
TU526603 lncRNA upstream 8318 427567 ~ 428566 (+) True G463884
TU526597 lncRNA upstream 12164 424439 ~ 424720 (+) True G463883
TU526614 lncRNA downstream 486 437649 ~ 438321 (+) True G463894
TU526613 lncRNA downstream 1413 438576 ~ 438922 (+) True G463893
TU526902 lncRNA downstream 17154 454317 ~ 455090 (+) True G464092
TU526932 lncRNA downstream 96775 533938 ~ 534393 (+) True G464120
TU526869 lncRNA downstream 130487 567650 ~ 570254 (+) True G464067
XM_036979169.1 mRNA upstream 361020 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 361020 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 387883 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 388057 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 5553 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 19457 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 105941 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 106259 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 114618 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 168733 265409 ~ 268151 (+) False G463813
TU526495 other upstream 168733 265409 ~ 268151 (+) True G463813
TU526352 other upstream 384394 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 386009 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 19670 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 791542 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1625165 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1962598 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1967956 2405119 ~ 2406090 (+) True G465355

Expression Profile