RNA id: TU526613


Basic Information

Item Value
RNA id TU526613
length 347
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G463893
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 438576 ~ 438922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCCATAGGCGCCCTCGCCAATATAGGAGAGATTGTGGTAGCGAGGGCCGACATCGAAGGCCTGTCCTCGGACTAACTCAGCGCCAGATCCGGGGTTGGGGCCGCTGCCAGCACTGGCAGATACTGCTGCTGTCGCCATTGTGAAAACTAGCTGTATTTTTAACACGTTCTCCACAGCCAAAAAGAAAGGGATAATACGAAAAGTCACCGCTGTAATAACGTTATACAACACAGTGAGACTTTATGAAGTCCTCAGTAACGGCGAAAGAGAGTAAGAAAAGTAATTTGTCCGCTCCTCGGCGCTATAACGTGTACAAAGCCTGATTCCACTGACTGCAGTCTGCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526614 lncRNA upstream 255 437649 ~ 438321 (+) True G463894
TU526612 lncRNA upstream 1413 436884 ~ 437163 (+) True G463892
TU526611 lncRNA upstream 1747 436229 ~ 436829 (+) True G463891
TU526609 lncRNA upstream 3149 435153 ~ 435427 (+) True G463889
TU526599 lncRNA upstream 10010 427567 ~ 428566 (+) False G463884
TU526902 lncRNA downstream 15395 454317 ~ 455090 (+) True G464092
TU526932 lncRNA downstream 95016 533938 ~ 534393 (+) True G464120
TU526869 lncRNA downstream 128728 567650 ~ 570254 (+) True G464067
TU526938 lncRNA downstream 154405 593327 ~ 599273 (+) True G464126
TU526945 lncRNA downstream 167475 606397 ~ 608103 (+) True G464132
XM_036979169.1 mRNA upstream 362712 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 362712 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 389575 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 389749 43896 ~ 48827 (+) False LOC118964799
XM_036979178.1 mRNA downstream 3794 442716 ~ 549899 (+) False LOC110525138
XM_036979179.1 mRNA downstream 17698 456620 ~ 549899 (+) False LOC110525138
XR_005051978.1 mRNA downstream 104182 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 104500 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 112859 551781 ~ 554254 (+) True LOC110525134
TU526492 other upstream 170425 265409 ~ 268151 (+) False G463813
TU526495 other upstream 170425 265409 ~ 268151 (+) True G463813
TU526352 other upstream 386086 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 387701 43925 ~ 50875 (+) False LOC118964799
TU526870 other downstream 17911 456833 ~ 459006 (+) True LOC110525138
TU527663 other downstream 789783 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1623406 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1960839 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1966197 2405119 ~ 2406090 (+) True G465355

Expression Profile