RNA id: TU526932


Basic Information

Item Value
RNA id TU526932
length 394
lncRNA type intronic
GC content 0.49
exon number 2
gene id G464120
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 533938 ~ 534393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtattaacccctccatccatccatccatcctgtattaacccatccatccatccatccatccatcctgtattaacccacccctccctccatccatccatcctgtattaacccctccatccatccatccatcctgtattaacccatccatccatccatccatcctgtattaacccacccctccctccatccatccatcctgtattaacccctccctccatccatccatcctgtattaacccatccctccatccctccatccatccatcctgtattaacccatccatccctccatccatccatcctgtattaacccatccatccatccctccatccatccatcctgtattaacccatccatccctccattcatccatcctgtattaacccATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526902 lncRNA upstream 78848 454317 ~ 455090 (+) True G464092
TU526613 lncRNA upstream 95016 438576 ~ 438922 (+) True G463893
TU526614 lncRNA upstream 95617 437649 ~ 438321 (+) True G463894
TU526612 lncRNA upstream 96775 436884 ~ 437163 (+) True G463892
TU526611 lncRNA upstream 97109 436229 ~ 436829 (+) True G463891
TU526869 lncRNA downstream 33257 567650 ~ 570254 (+) True G464067
TU526938 lncRNA downstream 58934 593327 ~ 599273 (+) True G464126
TU526945 lncRNA downstream 72004 606397 ~ 608103 (+) True G464132
TU526954 lncRNA downstream 80727 615120 ~ 615541 (+) True G464138
TU526973 lncRNA downstream 108495 642888 ~ 643281 (+) True G464154
XM_036979169.1 mRNA upstream 458074 56073 ~ 75864 (+) False LOC118964800
XR_005051976.1 mRNA upstream 458074 56073 ~ 75864 (+) False LOC118964800
XM_036979167.1 mRNA upstream 484937 43896 ~ 49001 (+) False LOC118964799
XM_036979168.1 mRNA upstream 485111 43896 ~ 48827 (+) False LOC118964799
XR_005051978.1 mRNA downstream 8711 543104 ~ 545704 (+) False LOC118964801
XR_005051979.1 mRNA downstream 9029 543422 ~ 545704 (+) True LOC118964801
XM_021605078.2 mRNA downstream 17388 551781 ~ 554254 (+) True LOC110525134
XR_005051981.1 mRNA downstream 20771 555164 ~ 555893 (+) True LOC118964804
XM_036979181.1 mRNA downstream 29884 564277 ~ 602519 (+) True tars1
TU526870 other upstream 74932 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 265787 265409 ~ 268151 (+) False G463813
TU526495 other upstream 265787 265409 ~ 268151 (+) True G463813
TU526352 other upstream 481448 43925 ~ 52490 (+) False LOC118964799
TU526351 other upstream 483063 43925 ~ 50875 (+) False LOC118964799
TU527663 other downstream 694312 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1527935 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1865368 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1870726 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 2270990 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile