RNA id: TU526945


Basic Information

Item Value
RNA id TU526945
length 947
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G464132
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 606397 ~ 608103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgattcggttggccattttatgtgtggattaattgtcggagtagaggtccttgtgcatttcaggtaaaataactcaatgtttatatcccaggacaaattagctatcaacagcaagctagctaaatcggacaaattaacgttagctagcaaatgcaagaaaactagctaaattgccatacatgtttaatgattttcgacctgtccccaaattaatgtcattggttcagagtttgttttgatctttgaacctgcgtgtcgtgatcgcgtttggtgtgcgggggcaaaataaatgtatgcacgatggtgaacgcgcgcagccggtttgggttccgtgtaattAGAAGAGATTTAACTTCACTCAACcttctagagcagtggtcaccaaccggtcgatcacGATCCACTGGtccatctccaaggcattcctagtcgatcgcgATCCACTGGTCCATCTCCAAGGCATCCCTAGTCGATCGCGATCCACTGGtccatctccaaggcattcctagtcgatcgcgATCCACTGGtccatctccaaggcattcctagtcgatcgcgATCCACTGGTCCATCTTCAAAgcatactatcaagagcagtggtactagacagagcagtgatactatccagagtagtgatactatccagaacagtgatactagtagtgatactatccagagcagtgatactatccagagtagtgatactatccagagcagtgatactatccagagcagtgatactatccagagcagtgatactatccagagcagtgatactatccagagcagtgatactatcagagtagtgatactatccagagcagtgatactatccagagcagtgatactatccagagcagtgatgcaagtagtgatactatccagagcagtgatactatccagagtagtgatactagcagtgatactatccagagcagtgatactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526938 lncRNA upstream 7124 593327 ~ 599273 (+) True G464126
TU526869 lncRNA upstream 36143 567650 ~ 570254 (+) True G464067
TU526932 lncRNA upstream 72004 533938 ~ 534393 (+) True G464120
TU526902 lncRNA upstream 151307 454317 ~ 455090 (+) True G464092
TU526613 lncRNA upstream 167475 438576 ~ 438922 (+) True G463893
TU526954 lncRNA downstream 7017 615120 ~ 615541 (+) True G464138
TU526973 lncRNA downstream 34785 642888 ~ 643281 (+) True G464154
TU526975 lncRNA downstream 36242 644345 ~ 644793 (+) True G464155
TU526978 lncRNA downstream 38420 646523 ~ 646809 (+) True G464157
TU527003 lncRNA downstream 110114 718217 ~ 725668 (+) True G464178
XM_036979181.1 mRNA upstream 3878 564277 ~ 602519 (+) True tars1
XR_005051981.1 mRNA upstream 50504 555164 ~ 555893 (+) True LOC118964804
XM_021605078.2 mRNA upstream 52143 551781 ~ 554254 (+) True LOC110525134
XM_036979179.1 mRNA upstream 56498 456620 ~ 549899 (+) False LOC110525138
XM_036979187.1 mRNA downstream 167561 775664 ~ 1118589 (+) False slc4a4a
XM_036979183.1 mRNA downstream 250205 858308 ~ 1118589 (+) False slc4a4a
XM_036979185.1 mRNA downstream 250206 858309 ~ 1118589 (+) False slc4a4a
XM_036979186.1 mRNA downstream 250207 858310 ~ 1118589 (+) False slc4a4a
XM_036979188.1 mRNA downstream 250207 858310 ~ 1118589 (+) True slc4a4a
TU526870 other upstream 147391 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 338246 265409 ~ 268151 (+) False G463813
TU526495 other upstream 338246 265409 ~ 268151 (+) True G463813
TU526352 other upstream 553907 43925 ~ 52490 (+) False LOC118964799
TU527663 other downstream 620602 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1454225 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1791658 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1797016 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 2197280 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile