RNA id: TU526954


Basic Information

Item Value
RNA id TU526954
length 260
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G464138
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 615120 ~ 615541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAGACAACCCAGTCACACCAGATAATCCAGTCACACCAGATAATCCAGTCACACCAGACAACCCAGTCACACCAGATAATCCAGTCACACCAGACAACCCAGTCACACCAGATAATCCAGTCACACCAGATAATCCAGTCACACCAGACAACCCAGTCACACCAGATAATCCAGTCACACCAGACAACCCAGTCACACCAGATAATCCAGTCACACCAGACAACCCAGTCACACCAGACAACCCAGTCACACCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU526945 lncRNA upstream 7017 606397 ~ 608103 (+) True G464132
TU526938 lncRNA upstream 15847 593327 ~ 599273 (+) True G464126
TU526869 lncRNA upstream 44866 567650 ~ 570254 (+) True G464067
TU526932 lncRNA upstream 80727 533938 ~ 534393 (+) True G464120
TU526902 lncRNA upstream 160030 454317 ~ 455090 (+) True G464092
TU526973 lncRNA downstream 27347 642888 ~ 643281 (+) True G464154
TU526975 lncRNA downstream 28804 644345 ~ 644793 (+) True G464155
TU526978 lncRNA downstream 30982 646523 ~ 646809 (+) True G464157
TU527003 lncRNA downstream 102676 718217 ~ 725668 (+) True G464178
TU527005 lncRNA downstream 111064 726605 ~ 730966 (+) True G464179
XM_036979181.1 mRNA upstream 12601 564277 ~ 602519 (+) True tars1
XR_005051981.1 mRNA upstream 59227 555164 ~ 555893 (+) True LOC118964804
XM_021605078.2 mRNA upstream 60866 551781 ~ 554254 (+) True LOC110525134
XR_005051978.1 mRNA upstream 69416 543104 ~ 545704 (+) False LOC118964801
XM_036979187.1 mRNA downstream 160123 775664 ~ 1118589 (+) False slc4a4a
XM_036979183.1 mRNA downstream 242767 858308 ~ 1118589 (+) False slc4a4a
XM_036979185.1 mRNA downstream 242768 858309 ~ 1118589 (+) False slc4a4a
XM_036979186.1 mRNA downstream 242769 858310 ~ 1118589 (+) False slc4a4a
XM_036979188.1 mRNA downstream 242769 858310 ~ 1118589 (+) True slc4a4a
TU526870 other upstream 156114 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 346969 265409 ~ 268151 (+) False G463813
TU526495 other upstream 346969 265409 ~ 268151 (+) True G463813
TU526352 other upstream 562630 43925 ~ 52490 (+) False LOC118964799
TU527663 other downstream 613164 1228705 ~ 1229099 (+) True G464705
TU528322 other downstream 1446787 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 1784220 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 1789578 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 2189842 2805383 ~ 2834110 (+) True LOC110525071

Expression Profile