RNA id: TU527974


Basic Information

Item Value
RNA id TU527974
length 218
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G464965
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 1551006 ~ 1551223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgtttagtgagtcctccagatcagagttagtagggataaccaaagatgttctctgttttgtgagtcctccagatcagagttagtagggataaccaaggatgttctctgtttagtgagtcctccatatcagaggcagtagggatgaccagggatgttctctgtttagtgagtcctccagatcagaggcagtagggatgaccagggacgttctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU527952 lncRNA upstream 53131 1497651 ~ 1497875 (+) True G464945
TU527918 lncRNA upstream 87497 1463146 ~ 1463509 (+) True G464914
TU527917 lncRNA upstream 88529 1461139 ~ 1462477 (+) True G464913
TU527909 lncRNA upstream 118992 1431638 ~ 1432014 (+) True G464907
TU527905 lncRNA upstream 123171 1426055 ~ 1427835 (+) True G464903
TU527976 lncRNA downstream 2834 1554057 ~ 1555803 (+) True G464967
TU527978 lncRNA downstream 6512 1557735 ~ 1566639 (+) False G464969
TU527979 lncRNA downstream 6512 1557735 ~ 1568336 (+) False G464969
TU527981 lncRNA downstream 6512 1557735 ~ 1563556 (+) False G464969
TU527982 lncRNA downstream 6512 1557735 ~ 1566639 (+) False G464969
XM_036979187.1 mRNA upstream 432417 775664 ~ 1118589 (+) False slc4a4a
XM_036979195.1 mRNA downstream 450865 2002088 ~ 2105141 (+) False LOC110525062
XM_036979196.1 mRNA downstream 450865 2002088 ~ 2105141 (+) True LOC110525062
XM_036979198.1 mRNA downstream 598017 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 598609 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 611326 2162549 ~ 2199894 (+) True LOC110525063
TU527663 other upstream 321907 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1092000 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1282855 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1282855 265409 ~ 268151 (+) True G463813
TU526354 other upstream 1500131 43925 ~ 50875 (+) False LOC118964799
TU528322 other downstream 511105 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 848538 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 853896 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 1254160 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 1427619 2978842 ~ 2982425 (+) True G465578

Expression Profile