RNA id: TU528317


Basic Information

Item Value
RNA id TU528317
length 225
lncRNA type intronic
GC content 0.40
exon number 2
gene id G465202
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2059971 ~ 2060253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATATATTtaccagagagagacatggtcatGGATATATTTACTAGAGAGAGACATGGTCAGGGATATATTtaccagagagagacATGGTCAGGGATATATTtaccagagagagacatggtcatGGATATATTTACCAGACAGAGACATGGTCAGGGATATATTtcccagagagagacatggtcatggatatatttaccagagagagacatggtcatggatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU528236 lncRNA upstream 98498 1959270 ~ 1961473 (+) False G465145
TU528230 lncRNA upstream 98498 1961023 ~ 1961473 (+) False G465145
TU528237 lncRNA upstream 98498 1961023 ~ 1961473 (+) False G465145
TU528240 lncRNA upstream 98498 1961023 ~ 1961473 (+) True G465145
TU528198 lncRNA upstream 135151 1923713 ~ 1924820 (+) True G465119
TU528342 lncRNA downstream 53637 2113890 ~ 2116021 (+) True G465222
TU528368 lncRNA downstream 114670 2174923 ~ 2175439 (+) True G465248
TU528384 lncRNA downstream 137490 2197743 ~ 2198832 (+) True G465261
TU528224 lncRNA downstream 142118 2202371 ~ 2202933 (+) False G465141
TU528225 lncRNA downstream 142426 2202679 ~ 2203051 (+) True G465141
XM_036979187.1 mRNA upstream 941382 775664 ~ 1118589 (+) False slc4a4a
XM_036979198.1 mRNA downstream 88987 2149240 ~ 2199894 (+) False LOC110525063
XM_036979197.1 mRNA downstream 89579 2149832 ~ 2199894 (+) False LOC110525063
XM_036979199.1 mRNA downstream 102296 2162549 ~ 2199894 (+) True LOC110525063
XM_036979208.1 mRNA downstream 298369 2358622 ~ 2401200 (+) False zfr
XM_036979200.1 mRNA downstream 298369 2358622 ~ 2409261 (+) False zfr
TU527663 other upstream 830872 1228705 ~ 1229099 (+) True G464705
TU526870 other upstream 1600965 456833 ~ 459006 (+) True LOC110525138
TU526492 other upstream 1791820 265409 ~ 268151 (+) False G463813
TU526495 other upstream 1791820 265409 ~ 268151 (+) True G463813
TU526354 other upstream 2009096 43925 ~ 50875 (+) False LOC118964799
TU528322 other downstream 2075 2062328 ~ 2064067 (+) True G465203
TU528467 other downstream 339508 2399761 ~ 2409258 (+) True zfr
TU528499 other downstream 344866 2405119 ~ 2406090 (+) True G465355
TU528673 other downstream 745130 2805383 ~ 2834110 (+) True LOC110525071
TU528784 other downstream 918589 2978842 ~ 2982425 (+) True G465578

Expression Profile