RNA id: TU530822


Basic Information

Item Value
RNA id TU530822
length 364
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G467221
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4587908 ~ 4597359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCGCCTGACTACAATATTTCATCTTAATAAATCAGTAACTAGATGCTGTATTAAACTTGGCGTGTTTTACCTGCCTACATACCGTAGATCACAAGTCCATAATAAGTCTATAGGGCTAACAGGCTAGCAATGCTGCTGCTCCCGAGGATGAAACGGTTCCAGTCCTCACTTTGTCCACTAGGTAGCGCTAGCTGTCTCTACTGAGGGTGCAGACAGAGCTTTGTCCACTAGGTATTGCTAGCTGTGTACTGCTCGATGTCTTCTTTATACTGCTTCACTGTTTAACCCGTTTGATAATCAGTCCCTCCTCCAAGCCTGAGCTTCAGCTAAGACTAAAGCTCTTCTGACTTGCATAATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU530922 lncRNA upstream 36155 4550623 ~ 4551753 (+) True G467285
TU530898 lncRNA upstream 55054 4528059 ~ 4532854 (+) False G467274
TU530911 lncRNA upstream 55054 4528059 ~ 4532854 (+) True G467274
TU530889 lncRNA upstream 55991 4528059 ~ 4531917 (+) False G467274
TU530930 lncRNA downstream 5329 4602572 ~ 4603398 (+) True G467293
TU530931 lncRNA downstream 12621 4609864 ~ 4610874 (+) True G467294
TU531332 lncRNA downstream 34319 4631562 ~ 4632132 (+) True G467643
TU531400 lncRNA downstream 83446 4680689 ~ 4680895 (+) True G467700
TU531405 lncRNA downstream 93200 4690443 ~ 4690651 (+) True G467705
XM_036979238.1 mRNA upstream 4548 4447482 ~ 4583360 (+) False LOC110525072
XM_036979239.1 mRNA upstream 4752 4489299 ~ 4583156 (+) True LOC110525072
XM_036979230.1 mRNA upstream 262226 4280042 ~ 4325682 (+) False LOC110511702
XM_036979231.1 mRNA upstream 262226 4281743 ~ 4325682 (+) True LOC110511702
XM_036979233.1 mRNA upstream 310403 4258166 ~ 4277505 (+) False LOC110525166
XM_021605116.2 mRNA downstream 46711 4643954 ~ 4650871 (+) False LOC110525169
XM_021605117.2 mRNA downstream 47614 4644857 ~ 4650871 (+) True LOC110525169
XM_021605124.2 mRNA downstream 193595 4790838 ~ 4792423 (+) True LOC110525174
XM_036979244.1 mRNA downstream 245632 4842875 ~ 4935449 (+) False bmp2k
XM_036979245.1 mRNA downstream 245633 4842876 ~ 4935449 (+) False bmp2k
TU530344 other upstream 814568 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 1605483 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 1753798 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2178650 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 1511136 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 1558204 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 1558204 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 1597529 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 1612956 6210199 ~ 6244501 (+) True G468755

Expression Profile