RNA id: TU531553



Basic Information


Item Value
RNA id TU531553
length 472
lncRNA type intronic
GC content 0.40
exon number 2
gene id G467828
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4923424 ~ 4924952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAACATCGGGTGGTTGTAATTTTACCTGAAATGTGCttagtgttgtttttgttgtgtgtgGATCTTTTCCAGTATTTTGACCTGTTTTTTGTAGTCACAGAATCGTTTTGATCTCTATTGCCGACAATTAAATCCACAGATTGAAGAGGGAACTTAGTGTTCAGTTAGTTTTCTGTCAACACCGCGTGGCATTCTTCTGTGGATTTTAAATGGCAATTGGCAAccaacttttatttaactaggcaagccagttaagaacaaattcttatttacgacgacgacaacacagcatggcagcaacacaacatagagagagacctacaacaacacagcatggtaccaacactacatagagacctacaacaacacagcatggtaacaacactacatagagacctacaacaacacagcatggtagcaacactacatagagacctacaacaacacagcatggtagcaacactacataga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU531548 lncRNA upstream 14535 4908560 ~ 4908889 (+) True G467823
TU531544 lncRNA upstream 30515 4889387 ~ 4892909 (+) True G467819
TU531439 lncRNA upstream 208023 4713374 ~ 4715401 (+) True G467733
TU531414 lncRNA upstream 225941 4697245 ~ 4697483 (+) True G467713
TU531405 lncRNA upstream 232773 4690443 ~ 4690651 (+) True G467705
TU531524 lncRNA downstream 9680 4934632 ~ 4935126 (+) False bmp2k
TU531528 lncRNA downstream 10264 4935216 ~ 4935448 (+) True bmp2k
TU531559 lncRNA downstream 17424 4942376 ~ 4942599 (+) True G467834
TU531564 lncRNA downstream 26631 4951583 ~ 4951844 (+) True G467839
TU531565 lncRNA downstream 27408 4952360 ~ 4952649 (+) True G467840
XR_005051987.1 mRNA upstream 5333 4914866 ~ 4918091 (+) True LOC118964809
XM_021605124.2 mRNA upstream 131001 4790838 ~ 4792423 (+) True LOC110525174
XM_021605116.2 mRNA upstream 272553 4643954 ~ 4650871 (+) False LOC110525169
XM_021605117.2 mRNA upstream 272553 4644857 ~ 4650871 (+) True LOC110525169
XR_005051986.1 mRNA upstream 329234 4592804 ~ 4594190 (+) True LOC118964808
XM_021605130.2 mRNA downstream 654822 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA downstream 654823 5579775 ~ 5585518 (+) True prdm8b
XM_036981819.1 mRNA downstream 698148 5623100 ~ 5624315 (+) True LOC118965066
XM_036979248.1 mRNA downstream 732316 5657268 ~ 5658483 (+) True LOC118964810
LOC110525066 mRNA downstream 1073874 5998826 ~ 6036553 (+) True LOC110525066
TU530344 other upstream 1150084 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 1940999 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2089314 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2514166 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 1183427 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 1230495 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 1230495 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 1269820 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 1285247 6210199 ~ 6244501 (+) True G468755

Expression Profile