RNA id: TU532059


Basic Information

Item Value
RNA id TU532059
length 218
lncRNA type intronic
GC content 0.43
exon number 1
gene id G468238
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5313959 ~ 5314176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAGCTGAGTGGCATGAGCAGATGACCAATCATCTGCTTACGAAGGGATGTTCATGTTTTAAGGCAAGTGTCAAgtgatactgtctgtgtgtttgtgcgtgtgtttgagtgtgtgtttgtgtgtttgagtgtgtgtttgtttttttgagtgtgtgtttgtgcgtgtgtttgagtgtgtgtttgtgtgtttgagtgtgagtttgtgcgtgtgtttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532042 lncRNA upstream 14130 5299440 ~ 5299829 (+) True G468221
TU532040 lncRNA upstream 14808 5298806 ~ 5299151 (+) True G468219
TU532039 lncRNA upstream 15339 5298401 ~ 5298620 (+) True G468218
TU532019 lncRNA upstream 30002 5283475 ~ 5283957 (+) True G468199
TU531973 lncRNA upstream 60323 5253237 ~ 5253636 (+) True G468179
TU532067 lncRNA downstream 1887 5316063 ~ 5317523 (+) True G468244
TU532065 lncRNA downstream 4172 5318348 ~ 5319703 (+) True G468242
TU532123 lncRNA downstream 98451 5412627 ~ 5414113 (+) True G468290
TU532130 lncRNA downstream 118920 5433096 ~ 5433480 (+) True G468296
TU532131 lncRNA downstream 119827 5434003 ~ 5434649 (+) True G468297
XM_036979244.1 mRNA upstream 378510 4842875 ~ 4935449 (+) False bmp2k
XM_036979245.1 mRNA upstream 378510 4842876 ~ 4935449 (+) False bmp2k
XR_005051987.1 mRNA upstream 395868 4914866 ~ 4918091 (+) True LOC118964809
XM_021605124.2 mRNA upstream 521536 4790838 ~ 4792423 (+) True LOC110525174
XM_021605116.2 mRNA upstream 663088 4643954 ~ 4650871 (+) False LOC110525169
XM_021605130.2 mRNA downstream 265598 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA downstream 265599 5579775 ~ 5585518 (+) True prdm8b
XM_036981819.1 mRNA downstream 308924 5623100 ~ 5624315 (+) True LOC118965066
XM_036979248.1 mRNA downstream 343092 5657268 ~ 5658483 (+) True LOC118964810
LOC110525066 mRNA downstream 684650 5998826 ~ 6036553 (+) True LOC110525066
TU530344 other upstream 1540619 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2331534 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2479849 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2904701 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 794203 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 841271 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 841271 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 880596 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 896023 6210199 ~ 6244501 (+) True G468755

Expression Profile