RNA id: TU532065


Basic Information

Item Value
RNA id TU532065
length 1245
lncRNA type read_through
GC content 0.46
exon number 3
gene id G468242
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5318348 ~ 5319703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGATTATCTGACCAAAAATGTTAAACTGAGAAATTAGACAAGAGACAAAAAATATATGTATGAAACTAATATCACAGCACCCTAAGGATTGTGTATCTGACCATCAGTGTCATTCCTGTCCCTTCCTGTCTACCCAGATAAAAAAACAAAGCAATAATTAAGTCAGAGACGACGTTGTGCACGCCCAACCCGTCTCGTGCACTTGCATGCCCACCAAATGTGAAAATcctggcccattccccctgaaaCTTGATGGTTGTTGAACTTATTTTTAGTGTCATATGATAAGCTTCCCTGGTTGCACAGAGACATCCCACTGACCCAGCCACTGGTCATTGTCTATACCGGTTCCCATCAAAACCGGGCGAGCTTTGTCAGGTTTCGGCTCGAATATCCATTTTGCATCTGAAGTACCGTATCCAAAGTGACTGGATCGTTGGAGCCATTTCTCTTCAGCTGCTGCCTTTCCTCCCCCACAATGCTCCTCTCTCGCTGACATCATTTTGGGATTGGCGTCATGACAACACGCTTGAGAAATCTACAACTAATATATATACTaccgtttttcttttttttttgggggggggggggtcgtggaGCGCTGCATGCGAGGCTTGGTAACATCATTTGAACAATACTTATCCGTACGTCACATCCATTGCCTTGGTTTTACGTTTGGGTTTCGGAGAGCCAGGGTGCACCAAACCGTCACCAAGGAGACAGGATGGGATGGCCTCTTTCTCTCCAAATAATGCACGTACAGTTATAGGTCATTCAATGTCAAAAGCAATAATACAAAAAAGACGACCAAATCTTCACAGGCTGCTGCTTGCTGTTCTCTTTAATTATTTTAATTAAACGTTGATTTTCTGCGGCTGAGGGAAGCTATAGGGCTGAGactggagggaggcagggaaGTCCTTGGAGGATTGGAGACAGAGGGGAAGGGTAGCAGTGACATTGGAGACAGAGGGGAAGGGGAGCAGTGACATTGGAGACAGAGGGGAAGGGGAGCAGTGACATtggagacagagggaaagggtAGCAGTGACATTGGAGACAGCTCTATCTATATTTTAAAACTCTTCAACTGACTGACTGTCATGTTTATTGGGTTGTGATGTTGTACGCCTTAGTGAGCATACAGCAGATTGCATCAAAACCGAGGGGAACACAGCCAAGCACCATGTCAGGGGCTTCAGGCAGCCTATCCCTTAAACCTAGTCTGAAGAAGAGAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532067 lncRNA upstream 825 5316063 ~ 5317523 (+) True G468244
TU532059 lncRNA upstream 4172 5313959 ~ 5314176 (+) True G468238
TU532042 lncRNA upstream 18519 5299440 ~ 5299829 (+) True G468221
TU532040 lncRNA upstream 19197 5298806 ~ 5299151 (+) True G468219
TU532039 lncRNA upstream 19728 5298401 ~ 5298620 (+) True G468218
TU532123 lncRNA downstream 92924 5412627 ~ 5414113 (+) True G468290
TU532130 lncRNA downstream 113393 5433096 ~ 5433480 (+) True G468296
TU532131 lncRNA downstream 114300 5434003 ~ 5434649 (+) True G468297
TU532223 lncRNA downstream 139811 5459514 ~ 5459717 (+) True G468369
TU532227 lncRNA downstream 143479 5463182 ~ 5509904 (+) True G468371
XM_036979244.1 mRNA upstream 382899 4842875 ~ 4935449 (+) False bmp2k
XM_036979245.1 mRNA upstream 382899 4842876 ~ 4935449 (+) False bmp2k
XR_005051987.1 mRNA upstream 400257 4914866 ~ 4918091 (+) True LOC118964809
XM_021605124.2 mRNA upstream 525925 4790838 ~ 4792423 (+) True LOC110525174
XM_021605116.2 mRNA upstream 667477 4643954 ~ 4650871 (+) False LOC110525169
XM_021605130.2 mRNA downstream 260071 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA downstream 260072 5579775 ~ 5585518 (+) True prdm8b
XM_036981819.1 mRNA downstream 303397 5623100 ~ 5624315 (+) True LOC118965066
XM_036979248.1 mRNA downstream 337565 5657268 ~ 5658483 (+) True LOC118964810
LOC110525066 mRNA downstream 679123 5998826 ~ 6036553 (+) True LOC110525066
TU530344 other upstream 1545008 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2335923 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2484238 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 2909090 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 788676 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 835744 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 835744 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 875069 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 890496 6210199 ~ 6244501 (+) True G468755

Expression Profile