RNA id: TU532334


Basic Information

Item Value
RNA id TU532334
length 209
lncRNA type intronic
GC content 0.35
exon number 2
gene id G468445
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5697565 ~ 5698207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgttctagaactattatagacAATATGGAGGCgttctagaactattatagacaatatggaggtgttctagaactattatagaccatatggaggtgttctagaactattatagacaatatggaggtgttctagaactattatagaccacatggaggtgttctagaactattatagaccatatggaggtgttctagaactattatagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532281 lncRNA upstream 104478 5547735 ~ 5593087 (+) True G468404
TU532265 lncRNA upstream 165702 5531630 ~ 5531863 (+) True G468388
TU532258 lncRNA upstream 174118 5522827 ~ 5523447 (+) True G468381
TU532227 lncRNA upstream 187661 5463182 ~ 5509904 (+) True G468371
TU532223 lncRNA upstream 237848 5459514 ~ 5459717 (+) True G468369
TU532374 lncRNA downstream 66972 5765179 ~ 5765640 (+) True G468483
TU532557 lncRNA downstream 194790 5892997 ~ 5893422 (+) True G468621
TU532566 lncRNA downstream 204948 5903155 ~ 5904297 (+) True G468626
TU532648 lncRNA downstream 227199 5925406 ~ 5926834 (+) True G468668
TU532656 lncRNA downstream 240294 5938501 ~ 5941493 (+) True G468673
XM_036979248.1 mRNA upstream 39082 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 73250 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 112047 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA upstream 112047 5579775 ~ 5585518 (+) True prdm8b
XM_036979244.1 mRNA upstream 762116 4842875 ~ 4935449 (+) False bmp2k
LOC110525066 mRNA downstream 300619 5998826 ~ 6036553 (+) True LOC110525066
XM_036979255.1 mRNA downstream 362401 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA downstream 362405 6060612 ~ 6147999 (+) False LOC110510489
XM_036979254.1 mRNA downstream 365139 6063346 ~ 6147999 (+) False LOC110510489
XM_036979259.1 mRNA downstream 365139 6063346 ~ 6147999 (+) False LOC110510489
TU530344 other upstream 1924225 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2715140 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 2863455 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3288307 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 410172 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 457240 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 457240 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 496565 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 511992 6210199 ~ 6244501 (+) True G468755

Expression Profile