RNA id: TU532648


Basic Information

Item Value
RNA id TU532648
length 1395
lncRNA type intronic
GC content 0.39
exon number 2
gene id G468668
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 5925406 ~ 5926834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaCTACGAGGAATAGGGTCCATTTGGGTTTAGACCACAGTACTACGAGGAATAGGGTCCACTTGGGTTTAGACCACAGTACTACGAGGAATAGGGTCCATTTGGGTTTAGACCACAGTACTACGAGGAATAGGGTCCATTTGGAAACACTGGGCAATATCAAGAGAAACGAAATATTAAATCAAATCCAttccaagtttatttgtcacgtgcgccgaatacaacaggtgtagtagaccttacagtgaaatactgaatacaacaggtgtagtagaccttacagcgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtattagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagttgaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtagaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtatagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgctgaatacaacaggtgtagtagaactcACAGTGAAAtatttacttacaggctctaaccaatagtgcaacaaaggtattaggtgaacaataggtaaataaagaaataaaaacaacagtagagaggctatttacagtagaggttatatacagtagtgaggctatatacagtagaggttatatacagtagatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532566 lncRNA upstream 21109 5903155 ~ 5904297 (+) True G468626
TU532557 lncRNA upstream 31984 5892997 ~ 5893422 (+) True G468621
TU532374 lncRNA upstream 159766 5765179 ~ 5765640 (+) True G468483
TU532334 lncRNA upstream 227199 5697565 ~ 5698207 (+) True G468445
TU532281 lncRNA upstream 332319 5547735 ~ 5593087 (+) True G468404
TU532656 lncRNA downstream 11667 5938501 ~ 5941493 (+) True G468673
TU532660 lncRNA downstream 20929 5947763 ~ 5949067 (+) False G468676
TU532659 lncRNA downstream 21639 5948473 ~ 5949067 (+) True G468676
TU532681 lncRNA downstream 49516 5976350 ~ 5976796 (+) True G468693
TU532676 lncRNA downstream 55931 5982765 ~ 5997048 (+) True G468690
XM_036979248.1 mRNA upstream 266923 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 301091 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 339888 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA upstream 339888 5579775 ~ 5585518 (+) True prdm8b
XR_005051987.1 mRNA upstream 1007315 4914866 ~ 4918091 (+) True LOC118964809
LOC110525066 mRNA downstream 71992 5998826 ~ 6036553 (+) True LOC110525066
XM_036979255.1 mRNA downstream 133774 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA downstream 133778 6060612 ~ 6147999 (+) False LOC110510489
XM_036979254.1 mRNA downstream 136512 6063346 ~ 6147999 (+) False LOC110510489
XM_036979259.1 mRNA downstream 136512 6063346 ~ 6147999 (+) False LOC110510489
TU530344 other upstream 2152066 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 2942981 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 3091296 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3516148 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 181545 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 228613 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 228613 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 267938 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 283365 6210199 ~ 6244501 (+) True G468755

Expression Profile