RNA id: TU532698


Basic Information

Item Value
RNA id TU532698
length 225
lncRNA type intronic
GC content 0.50
exon number 1
gene id G468710
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6035292 ~ 6035516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTCATAGGGTTAGTGGTAGGCAATAGGGACTGTCCATCTAGGGTTAGTGGTAGGCTATAGGGACTGTCCTCATAGGGTTAGTGGTAGGCTATAGGGACTGTCCTCATAGGGTTAGTGGTAGGCTATTGGGACTGTCCTCATAGGGTTAGTGGTAGGCTATAGGGACTGTCCTCATAGGGTTAGTGGTAGGCTATAGGGACTGTCCTCATAGGGTTAGTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532696 lncRNA upstream 10043 6024989 ~ 6025249 (+) True G468708
TU532693 lncRNA upstream 13670 6021232 ~ 6021622 (+) True G468705
TU532690 lncRNA upstream 21536 6006145 ~ 6013756 (+) True G468702
TU532676 lncRNA upstream 38244 5982765 ~ 5997048 (+) True G468690
TU532681 lncRNA upstream 58496 5976350 ~ 5976796 (+) True G468693
TU532702 lncRNA downstream 7774 6043290 ~ 6043773 (+) True G468714
TU532622 lncRNA downstream 42689 6078205 ~ 6078860 (+) True LOC118964812
TU532724 lncRNA downstream 62284 6097800 ~ 6098113 (+) True G468729
TU532728 lncRNA downstream 65386 6100902 ~ 6104592 (+) True G468731
TU532639 lncRNA downstream 66230 6101746 ~ 6155418 (+) True G468659
XM_036979248.1 mRNA upstream 376809 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 410977 5623100 ~ 5624315 (+) True LOC118965066
XM_021605130.2 mRNA upstream 449774 5579774 ~ 5585518 (+) False prdm8b
XM_036979247.1 mRNA upstream 449774 5579775 ~ 5585518 (+) True prdm8b
XR_005051987.1 mRNA upstream 1117201 4914866 ~ 4918091 (+) True LOC118964809
XM_036979255.1 mRNA downstream 25092 6060608 ~ 6147999 (+) False LOC110510489
XM_036979260.1 mRNA downstream 25096 6060612 ~ 6147999 (+) False LOC110510489
XM_036979254.1 mRNA downstream 27830 6063346 ~ 6147999 (+) False LOC110510489
XM_036979259.1 mRNA downstream 27830 6063346 ~ 6147999 (+) False LOC110510489
XM_036979251.1 mRNA downstream 42661 6078177 ~ 6088723 (+) False LOC118964812
TU530344 other upstream 2261952 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3052867 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 3201182 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3626034 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 72863 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 119931 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 119931 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 159256 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 174683 6210199 ~ 6244501 (+) True G468755

Expression Profile