RNA id: TU532728


Basic Information

Item Value
RNA id TU532728
length 364
lncRNA type intronic
GC content 0.38
exon number 2
gene id G468731
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6100902 ~ 6104592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactatgcactctatctaggttgttgtaatgctatgcactctatcatagaggttgttgtaatgctatgcactctatctaggttgttgtaacactatgcactctatcttagaggttgttgtaatgctatgcactctatcatagaggttgtAGTAAcactatgcactctatctaggttgttgtaatgctatgcactctatctaggttgttgtaatgctatgcactctatcttagaggttgttgtaatgctatgcactctatcttagaggttgttgtaatgctatgcactctatcttagaggttgttgtaatgctatgcactctatcttagaggttgttgtaatgctatgcactcaatcttagaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532724 lncRNA upstream 2789 6097800 ~ 6098113 (+) True G468729
TU532622 lncRNA upstream 22042 6078205 ~ 6078860 (+) True LOC118964812
TU532702 lncRNA upstream 57129 6043290 ~ 6043773 (+) True G468714
TU532698 lncRNA upstream 65386 6035292 ~ 6035516 (+) True G468710
TU532696 lncRNA upstream 75653 6024989 ~ 6025249 (+) True G468708
TU532742 lncRNA downstream 5180 6109772 ~ 6157086 (+) True G468733
TU532744 lncRNA downstream 9889 6114481 ~ 6115778 (+) False G468735
TU532745 lncRNA downstream 9889 6114481 ~ 6115297 (+) True G468735
TU532585 lncRNA downstream 66836 6171428 ~ 6173403 (+) False LOC118964813
TU532596 lncRNA downstream 66836 6171428 ~ 6173403 (+) False LOC118964813
XM_036979251.1 mRNA upstream 12179 6078177 ~ 6088723 (+) False LOC118964812
LOC110525066 mRNA upstream 64349 5998826 ~ 6036553 (+) True LOC110525066
XM_036979248.1 mRNA upstream 442419 5657268 ~ 5658483 (+) True LOC118964810
XM_036981819.1 mRNA upstream 476587 5623100 ~ 5624315 (+) True LOC118965066
XM_036979247.1 mRNA upstream 515384 5579775 ~ 5585518 (+) True prdm8b
XM_036979253.1 mRNA downstream 7888 6112480 ~ 6147999 (+) False LOC110510489
XM_036979252.1 mRNA downstream 7889 6112481 ~ 6147999 (+) False LOC110510489
XM_036979257.1 mRNA downstream 7890 6112482 ~ 6147999 (+) False LOC110510489
XM_036979256.1 mRNA downstream 13486 6118078 ~ 6147999 (+) False LOC110510489
XM_036979258.1 mRNA downstream 29153 6133745 ~ 6147999 (+) True LOC110510489
TU530344 other upstream 2327562 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3118477 2978842 ~ 2982425 (+) True G465578
TU528673 other upstream 3266792 2805383 ~ 2834110 (+) True LOC110525071
TU528467 other upstream 3691644 2399761 ~ 2409258 (+) True zfr
TU532741 other downstream 3787 6108379 ~ 6156681 (+) False G468732
TU532738 other downstream 50855 6155447 ~ 6156681 (+) False G468732
TU532739 other downstream 50855 6155447 ~ 6156681 (+) True G468732
TU532623 other downstream 90180 6194772 ~ 6199155 (+) True G468643
TU532773 other downstream 105607 6210199 ~ 6244501 (+) True G468755

Expression Profile