RNA id: TU532760


Basic Information

Item Value
RNA id TU532760
length 1098
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G468747
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6180233 ~ 6205812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGATTGTCCTGCTGAAGTCCCGAACCCTCACACGCTGCTGACCACTGTTCCCCCGGATGCCAAATACTTCACGGTTATTGACCTGTGTGGAGCATAtgtagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatattgtgggtggactatgtgaaatattgaccccTATAGCAGATAtgtagtgggaggactatgtgacatattgacctctatggcagatatatagtgggaggactatgtgacatattgacctctatagcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacccctatagcagatatataatgggaggactatgtgaaatattgataGGATTGTGGAGCAGATGGGCCCTCTGAACTACCAAGTGGTGACAGTGGACACCGGTGAAGATATGTGGATGTGTTCAACCCTCCGTTCAGAAGAGTCTTTACTACCTTTAaccaggatcggatccactcaTTACTTCCTTTAGACAACACATCTTATTATTTATGGTTGTGTGGTAAAAGAGTTGatatttgattgtatgatttgagACTGGGTTCACGCTACACTTTATAAACGGACAAATATTGCGTGACTAAGGTGACTTGAGTTCACTGAACTCATTTACTGGGCTGGACTCTTTTAGGCCTGAGGAACAGGACATTTTTGGAGGAACCAGAGCTCATtatttgttatattattatgtgtgtgatCATTTATGTTGGTAAAACAACCCACGCAAAGGATACTGTTGTTTGAACTTAtttccaatgttttaagggtttatgaaaagtgtatgtccatcctgacttttacatgagtcctttgtattggtgtagacttgacgaACCAGACAGCACTCATTCCGTCCAAAACCAAAAGGAGAAATCCATATTTTCTCTGGTAGGcgcaacctacctggcacccctacaAACAGCACTACTATGTGAGCAGTCTGAGAATGACTGAATGCTTCATAATAAGACATCAAGctgattttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532585 lncRNA upstream 6830 6171428 ~ 6173403 (+) False LOC118964813
TU532596 lncRNA upstream 6830 6171428 ~ 6173403 (+) False LOC118964813
TU532603 lncRNA upstream 6830 6171428 ~ 6173403 (+) False LOC118964813
TU532606 lncRNA upstream 6830 6171428 ~ 6173403 (+) True LOC118964813
TU532742 lncRNA upstream 23147 6109772 ~ 6157086 (+) True G468733
TU532771 lncRNA downstream 1168 6206980 ~ 6209705 (+) True G468754
TU532785 lncRNA downstream 22130 6227942 ~ 6228783 (+) True G468764
TU532791 lncRNA downstream 23487 6229299 ~ 6231849 (+) True LOC110510500
TU532633 lncRNA downstream 45366 6251178 ~ 6363339 (+) True G468653
TU532799 lncRNA downstream 52156 6257968 ~ 6261479 (+) True G468770
XM_036979262.1 mRNA upstream 6822 6166943 ~ 6173411 (+) False LOC118964813
XM_036979253.1 mRNA upstream 32234 6112480 ~ 6147999 (+) False LOC110510489
XM_036979286.1 mRNA downstream 18442 6224254 ~ 6231400 (+) False LOC110510500
XM_036979285.1 mRNA downstream 217329 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 276200 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 403109 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 477095 6682907 ~ 6692547 (+) True ydjc
TU532741 other upstream 23552 6108379 ~ 6156681 (+) False G468732
TU532738 other upstream 23552 6155447 ~ 6156681 (+) False G468732
TU532739 other upstream 23552 6155447 ~ 6156681 (+) True G468732
TU530344 other upstream 2406893 3772864 ~ 3773340 (+) True G466813
TU528784 other upstream 3197808 2978842 ~ 2982425 (+) True G465578
TU532773 other downstream 4387 6210199 ~ 6244501 (+) True G468755
TU532794 other downstream 48664 6254476 ~ 6343615 (+) False G468768
TU532821 other downstream 171827 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 217602 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 345165 6550977 ~ 6553095 (+) False G468841

Expression Profile