RNA id: TU532615


Basic Information

Item Value
RNA id TU532615
length 1679
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G468635
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6200159 ~ 6201970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGATAACTCACTAAGTGAAGGATGGACCACTATAGACTAGAAACAGTAGGAGACAACAGGACAATatTGAGAACTCACTAAGTGAAGGATGGTCCACTATAGACTAGAAACAGTaggagacaacaggacaacatTGATAACTCACTAAGTGAAGGATGGTCCACTAGACTAGAAACAGTAGGAGACAACAGGACAATATTGATAACTCACTAAGTGGAGGATGGTCCACTATAGACTAGAAACAGTAGGAGACAACAGGACAATATTGATAACTCACTAAGTGAAGGAtggtcactatagactagaaACAGTAGGAGACAACAGGACAATATTGATAACTCACTGGATGGAGGAACCTCCATGCTGTCTCTCCTCCTGACTGGGAGTATGGAACCTGTATCTGACGTCTCTCCATGTTCTAGAATAATAGAACAACCATTTAGAATGGGAACATTTACCTCAGTGACACATGAAGGCACATAGACCTACTGAAGGGGAGTTCTGGGTTTCTACTGAAATGTTAAGTATCACATATCTCACTCACCAGTCATCTGGGCTGAGATctctcttctcagtctctctacctcagtCTTCACATCACATATCTGTTGAGCTGAAATAACAAAGGAGGACTAGGATCTGAATTCTGTGTTAAAGACTTTAGACAGAAATATGATGCAGAGGGAAAGTATGAAGTGATGGACAACAATATTCACAACTCAGTGGAGAGTCGACAATAACCTGAGAATTGAGGAAAGTACAGAAGACTAAAAGTATTAATGGTGTGAATAATCTTACCCAGTTCAGCATTTTCATTGTTGACATCCTCCacctgtttgtctctctcctttaactggttctctctctcctctagtagGTTGTCTTTCTCTTCtacttcctgtctcctctcttctacttcctgtctcctctcttttaGTTCATTTTCTTTTCCCTccagtagtctgtctctctcttccagtagtttgtctctctcttccagtagtttgtctctctcttccagtagtctgtccttctctcccagtctgtggttcctgtcctctagttgaatgtctctctcttccagtagtttgtctctctcttccagtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAATGTCTCTATCCTTTAGTTGTTTGACTCTCTCTTCCAGtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAATGTCTCTATCCTTTagttgtttgtctctctcttccagtagtctgtccttctctcccagtCTGTGGTTGCTGTCCTCTAGTTGAATGTCTCTATCCTTTagttgtttgtctctctcttccagtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAAGGTATTTTTCCTGCAGTAGGACTCTGAAGTTCTCTACTTGGCTGTTCTTGTCCTGCAGGTTCTTTCTCAGAGCCTCTAGTTGAATGGCTCTATCCTTTAGTTGCTTGTCTTTCTCTTCCAGttggttttctttctctctcacttcctggGTCATATCATCCAGttgtttgtctttctctctcacttcctggGTCATATCATCCAGttgtttgtctttctctctcacttcctggGTCATATCATCCAGTTGTTTGTCTTTCTCCTCTAGTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532767 lncRNA upstream 7554 6190157 ~ 6192605 (+) False G468753
TU532768 lncRNA upstream 7554 6190498 ~ 6192605 (+) True G468753
TU532585 lncRNA upstream 26756 6171428 ~ 6173403 (+) False LOC118964813
TU532596 lncRNA upstream 26756 6171428 ~ 6173403 (+) False LOC118964813
TU532603 lncRNA upstream 26756 6171428 ~ 6173403 (+) False LOC118964813
TU532640 lncRNA downstream 108 6202078 ~ 6242781 (+) True G468660
TU532761 lncRNA downstream 673 6202643 ~ 6205812 (+) True G468747
TU532770 lncRNA downstream 3112 6205082 ~ 6209705 (+) False G468754
TU532771 lncRNA downstream 5010 6206980 ~ 6209705 (+) True G468754
TU532785 lncRNA downstream 25972 6227942 ~ 6228783 (+) True G468764
XM_036979262.1 mRNA upstream 26748 6166943 ~ 6173411 (+) False LOC118964813
XM_036979252.1 mRNA upstream 52160 6112481 ~ 6147999 (+) False LOC110510489
XM_036979286.1 mRNA downstream 22284 6224254 ~ 6231400 (+) False LOC110510500
XM_036979285.1 mRNA downstream 221171 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 280042 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 406951 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 480937 6682907 ~ 6692547 (+) True ydjc
TU532623 other upstream 1004 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 43478 6108379 ~ 6156681 (+) False G468732
TU532738 other upstream 43478 6155447 ~ 6156681 (+) False G468732
TU532739 other upstream 43478 6155447 ~ 6156681 (+) True G468732
TU530344 other upstream 2426819 3772864 ~ 3773340 (+) True G466813
TU532773 other downstream 8229 6210199 ~ 6244501 (+) True G468755
TU532794 other downstream 52506 6254476 ~ 6343615 (+) False G468768
TU532821 other downstream 175669 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 221444 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 349007 6550977 ~ 6553095 (+) False G468841

Expression Profile