RNA id: TU532794


Basic Information

Item Value
RNA id TU532794
length 5602
RNA type TUCP
GC content 0.44
exon number 4
gene id G468768
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6254476 ~ 6371873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggggtaaagactgagtttgggttagggtgtttaGGGGACAGGGCTGGAGGTAAAGGCtgagtttgggttagggtgtgtaggggacagggctgggggtaaagactgagtttgggttagggtgtgtagggGACAGGGCTGGGGGTAAAGACTGTAAGTATGGGAGGCTGCATTAAGGCgtctgcatgcttcccagccaaaaCAATCTGAACAGTTCTTCCATATGTATGATGATTGTAGGGGCTTCCTGCCTCTTGACCAGAACCACTTCCCAAGCCTGAAGTGGGGTTGTTTCAGACGCATACAGTCCACATTCCAAGTTCCCAAACGGCCAAAACATTCAATGAGATCCAGGGATATGGTGCAACAAAAAGGTTTATTCTTCTTATATCTCACAAAAAACATATTCTCAGATCAACTTAAAGCATAGATTACTTGACATGAAAAATACATAATATGACCTGTTTGTTGTCTGGTTAAAAGACTATACCACTCCGTGTCTAGCTAGGACTCCCCCTCCCCCGAAGGCCCAACTTCCTGTCTTTATCCTGTCACTAACACACTGACCACAGTACAATGAATGGTCAAGAGGAGGAGTTAAAAACTAAGGTACACTTATAACAAAGGAATATATCTCAATGAGGTCAATATAAATCATCAAGGTGCCTGATATTTCATCATATACATTCATATTTCATATATTTACACACCTTTACATGGAGCTCTGTATGTTCTGTCTTTTATAGAAATATGTCCACATCGGCTCTAACATACCGGTCCCTAATTGTTAACAGCAGTGAAAACATTACAGTTActtaatatttaaaaaatagaGCCAATTCACAAAACATTCTATACCAGAGCACTATTACGGTTCATagctacactaccgttcaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcatttttttttgtccattcaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggctgatttttaatggaatatctacataggtgtacagagaaCCATTATCAgcaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaaggctaactaatcattgtaattatgttagcacagctgaaaactgttgttctgattaaagaagcagtgaaactggccttctttagactagttgagtgtctggagcatcagcatttgtgggttcgattacaggctcaaaatggtcagaaacaaagactttcttctgaaacttgtcagtctattctggttctgagaaatgaaggctattccatgtgagaaaatgccaagaaactgaaaatctcatacaacgctgTGTACTTcaaagaacagcgcaaactgtctctaaccagaagagaaagagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtgtagtttgagaaacagatgtctcacaagtcctcaactggcagcttcaccCCATAATggaagagttgcaaagaaaaagccatatcgctgtccagtgtctgtgttcttttgcccgtcttaatctttcctttttattggccagtctgagatgtggctttttctttggaactctgcctagaaggccagcatcccggagtcgcctcttcactgttgacatttagactggtgttttgcggttacTATTTAATGAACCTGCCAGTTGTtgacatttctaagtaaccccaaacttttgaatggttttgtatatacaaatatacaagGTCCCATATAGGACAAGAGTCCACTGATCTCAGTCTCAGAGTTCAAGTGTTCAACATCCAAAAATTGACGTCCAAAAATGTAAGCATTTGACTTGACTCAAAgatggatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcactcagCTGCCTCCAGGAGAAGACAGCGTTTATTGATAGGTCTCTGTAATATGTTGATCTTGGTCTTTAACCATGACGCTCCGGACAAGACCTTTGACCCTGGAAAAGCCTTCACCACACGCCCCATTAGCCAAGAGTTCCTTGGCGCGGTGTCATCGACGATGACCACAAGGTCACCAGCACTGAGGCTTCTCTTAGTTTTTGTTCCACTCCTGCATAAGTGGAAGATACTCCCTGATCCATCTCTTCCAGAAGAGGTGATATATTGTACTTGCTTCCATCTCCATCATGAGTACAGATCTCCTCTCTGGAATTGTCCTGTGGTAGGACTGGCTTTGTTTTCAGATGAAGCTGATGGTAGCAGTCAGGGGTTCTAGATCATTATGGTCATTTGTTACAGTTGTGATTGGTCTGTTGTTCATGATCACCTCAACTTCTGCAAAGCCTCATCATCCAGTACTTGCTCTTTAGGGACTGAATAGAGGATCTTTTTCCACCAGTCTGCTCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACAGATCAACCTCTCCCATAACCCCCATGGTGGGCTCCAGAGGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTACAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGAGGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGAGCGAGGGTTGAATAGCCATGTTACTCCATCCTTCAGTAATTCATTTGAATCTTGTTGTGTTCCAGCTCTACCAGAGCTTCTCCTAGCTCTCTGTGTGTTCCAACAAAGTTGGTGCCGTTGTCTGTTTTGACACTTGTTACTGAGCCCCTTCGACAGATGAACCTGCGCAGGGCATTGATACAGGAATCAGTATCCAGATAACTAGCAACTTCTAGATGGACAGCTCAACTCACTAGGTAAGTAAAGATCCCACCATACCATTACACATGAACGCGGCCTCGCTTCACCTCTATGGGGCTGAAGTAATCTATGCCCACATGGGTGAATGGCAGCAAATCAGGTGACACCCGATCTTGTGGAAGGTTGGCCATCTTCTGTTCTCCAGCTCTAGCTTACATCACCTGCATAAGACACATCTCTTAAGGATCATCCTTGCTAAGAGTTTGGCACAGGGTATCCAATATTGCTGGTGAAGTATGGAAAGCATGTGACCTCTCCTAGAGTGGCCAACCTGCTCATGGATGTGGAATAAGATCAGTCTGGAGATGTGGGAGTCTTTGGCCAGGATCGTAAAAGTCTTTAGTTCCGTAGGCATAGCAGCTTTGCTTAACCTTCCTCCCACTCTCACGCTTTTACAAACGTCAGTTTGAACTTGTCAATTTGGTCCTTTAGTGAGTTTGTTAAACTCTGATATGATCCTGGATCAGTTTGCAAAAACAGGCTTTCTGGCTTAACTGTAGAAGAAGTCTTCAGTTTCAGCATCCAGGAAACTGCTTTCTTCAAGCTGTTCCATGTTGAATAGTACTCAGTTTGCTGGTCGGACTCTTTTCATCCACACTTGTACTGTTCACGATGATGTTCTTTCTCAACCAGATCATCCAGAGGGATGGAGCCAAGCTCCTCGGGGACTTTCTGCCATTGTGTTTCTAGTTTCTTCAGGAATTCTGGTCCTTTGAGTCATCTCTTTGAGTTCAGGAATGTTTCAGCATGTAACCCTCAAGGCATCGTCGGCTGGGTTGTGTTGGGAGTTCAAATAGCTCCACTGTGTTGCTTTCGAGAAGTCACGGATCATAGAAACCCTATTAGCCACAAAGGTATGGAATATCTTGGTATCATTGCGGATGTATTTTAGCACAGACTGGCTGTCTGTCCAGAAAGTTGACTCCCCAAGTTCAATCTGGAGCTCCAACCTTAACATCCTGTCCACTGGCACTTCCAATGTTGCTGCATCAAGTTCCATTCTGGGGATCATCTGCTTGAGTGGAGTCACTCTTGATCTCCCCAATATGAATGGGATGTGGACCTATTCCATACCGTTTGTGAACCCAAGGTAACTTGCCGTGCCATAACCTTGTTCTCTCGCGTCACCGAAGTGATGCAGCTTTGCCGTCTTGACTTGACCAAAGTTCTCAGGCATCATACAACTGTCAATCTGGAATCTGGACAGCTGGTCCAGCTCAGAGCCATTTCCTCCATGAAATAGAGTGTTCTTTGGGATGACTTTGTCCCATCCACACTTTAGCTTGCAGAGCTCGTATAATTTGCTTTGATAGAGCAAGAAATGTCTCCTTCCACTTTGCCAATCTCTAATCCCGATATCTCAAAGCTCTTGGTAGGACTCTAATGCCTCATTGtgttgcagaatatcagtctcaCTGCCTTTAGCTCTCAGCTGCATCATGAGTCTCTCAGTACAAAATGTTGCTAAACTACCAAAATCAAGAAATGCATTGGTTAACACAGACTTGCTTCCATTTTCCAGCTTTACTTGAACTGGCACAATTGCAAGTGTACCATCTGTACCGACCTCGGTATCTTCACCAGCTTCCAGTGAAACAAGAGCACTGCTGACAGTCTCCTCCCGCTTTACTGCTACACCCCTCGTATCTGCCTTCAGAGATCTaaatctctctcttccttcaaTGTGCAGGATAGTGGGGTCTTTCTTTGGCAGCTCTGACAGGTCCTCCTTCTTTTATATTCTTTGCTTAAGTGTCCTTTCATCCAACAGCCAAAACAAAGACCTCTTGATCTTAGAAACTCAACCTTGGATTTGTGTGGCTGTACCTTCACCTGTTGGCAGTCGACCAAGAAATGTTCACCAGCACGAAATACACAAGATACTGGGAGCATCAGAAGGGCAGGTGTCTGGTCTCTTTACTTTGAATGTTTGTTCTTTTAAAAAAATTTTAGAGTTGCAAACTGACTCTACATCTACTGCAGTGGCAAAGCTGCTTCCCCTACTCTTGGACTTGAACTGCTGTTTTGAATCTGCTGATGTTTAGTTTTTTAAAAAACCTTTTGTTGGACAGGGGATATTGAATATCTCCATACAACGTATCCTGCAATATTTTGGCCTGTTATGTTGGAGGGAAGATTAAGCTCTTCCATGTTCTGTAGGTCTTGCATAGCGTTACAGcaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532640 lncRNA upstream 11695 6202078 ~ 6242781 (+) True G468660
TU532791 lncRNA upstream 22627 6229299 ~ 6231849 (+) True LOC110510500
TU532785 lncRNA upstream 25693 6227942 ~ 6228783 (+) True G468764
TU532770 lncRNA upstream 44771 6205082 ~ 6209705 (+) False G468754
TU532771 lncRNA upstream 44771 6206980 ~ 6209705 (+) True G468754
TU532642 lncRNA downstream 381 6343996 ~ 6345224 (+) True G468662
TU532820 lncRNA downstream 6481 6350096 ~ 6379704 (+) False G468791
TU532822 lncRNA downstream 6481 6350096 ~ 6379269 (+) False G468791
TU532823 lncRNA downstream 6481 6350096 ~ 6379704 (+) False G468791
TU532824 lncRNA downstream 6481 6350096 ~ 6379704 (+) False G468791
XM_036979286.1 mRNA upstream 23076 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 81065 6166943 ~ 6173411 (+) False LOC118964813
XM_036979252.1 mRNA upstream 106477 6112481 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 79526 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 138397 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 265306 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 339292 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 367279 6710894 ~ 6713091 (+) False ccl19a.2
TU532773 other upstream 9975 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 55321 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 97795 6108379 ~ 6156681 (+) False G468732
TU532738 other upstream 97795 6155447 ~ 6156681 (+) False G468732
TU532739 other upstream 97795 6155447 ~ 6156681 (+) True G468732
TU532821 other downstream 34024 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 79799 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 207362 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 328893 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 328893 6672508 ~ 6674387 (+) False G468887

Expression Profile