RNA id: TU532797


Basic Information

Item Value
RNA id TU532797
length 1230
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G468768
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6254476 ~ 6371873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTTCCTCTTGACCAGAACCACTTCCCAAGCCTGAAGTGGGGTTGTTTCGGACGCATACAGTCCACATTCCAAGTTCCCAAACGGCCAAAACATTCAATGAGATCCAGGGATATGGTGCAACAAAAAGGTTTATTCTTATTATATCTCACAAAAAAACATATTCTCCCATCAACTTAAAGCATAGATTACTTGACGTGAAAAATACATAATATGACCTGTTTGTTGTCTGGTTAAAAGACTATACCACTCCCGTGTCTAGCTAGGACTCCCCCTCCCCCGAAGGCCCAACTTCCTGTCTTTATCCTGTCACTAACACACTGACCACAGTACAATGAATGGTCAAGAGGAGGAGCTAAAACCTAAGGTACACTTATAACAAAGGAATATATCTCAATGAGGTCAATATAAATCATCAAGGTGCCTGATATTTCATCATATACATTCATATTTCATATATTTACACACCTTTACATGGAGCTCTGTATGTTCTGTCTTTTATAGAAATATGTCCACATCGGCTCTAACATACCGGTCCCTAATTGTTAACAGCAGTGAAAACATTACAGTTActtaatatttaaaaaatagaGCCAATTCACAAAACATTCTATACCAGAGCACTATTACGGTTCATagctacactaccgttcaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcatttttttttgtccattcaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggctgatttttaatggaatatctacataggtgtacagagaaCCATTATCAgcaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaaggctaactaatcattgtaattatgttagcacagctgaaaactgttgttctgattaaagaagcagtgaaactggccttctttagactagttgagtgtctggagcatcagcatttgtgggttcgattacaggctcaaaatggtcagaaacaaagactttcttctgaaacttgtcagtctattctggttctgagaaatgaaggctattccatgtgagaaaatgccaagaaactgaaaatctcatacaacgctgtgcacTGTACTTcaaagaacagcgcaaactgtctctaaccagaagagaaagagtgggaggccccggtgcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532799 lncRNA upstream 18316 6257968 ~ 6261479 (+) True G468770
TU532640 lncRNA upstream 37014 6202078 ~ 6242781 (+) True G468660
TU532791 lncRNA upstream 47946 6229299 ~ 6231849 (+) True LOC110510500
TU532785 lncRNA upstream 51012 6227942 ~ 6228783 (+) True G468764
TU532770 lncRNA upstream 70090 6205082 ~ 6209705 (+) False G468754
TU532793 lncRNA downstream 450 6309835 ~ 6371873 (+) True G468768
TU532629 lncRNA downstream 13838 6323223 ~ 6402817 (+) True G468649
TU532818 lncRNA downstream 27568 6336953 ~ 6365890 (+) True G468789
TU532798 lncRNA downstream 28954 6338339 ~ 6368451 (+) True G468769
TU532642 lncRNA downstream 34611 6343996 ~ 6345224 (+) True G468662
XM_036979286.1 mRNA upstream 48395 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 106384 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 131796 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 113756 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 172627 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 299536 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 373522 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 401509 6710894 ~ 6713091 (+) False ccl19a.2
TU532773 other upstream 35294 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 80640 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 123114 6108379 ~ 6156681 (+) False G468732
TU532821 other downstream 68254 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 114029 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 241592 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 363123 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 363123 6672508 ~ 6674387 (+) False G468887

Expression Profile