RNA id: TU532793


Basic Information

Item Value
RNA id TU532793
length 2433
lncRNA type antisense_over
GC content 0.45
exon number 5
gene id G468768
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6254476 ~ 6371873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGACTCAAAgatggatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcactcagCTGCCTCCAGGAGAAGACAGCGTTTATTGATAGGTCTCTGTAATATGTTGATCTTGGTCTTTAACCACGACGCTCCGGACAAGACCTTTGACCCTGGAAAAGCCTTCACCACACGCCCCATTAGCCAAGAGTTCCTTGGCGCGGTGTCATCGACGATGACCACAAGGTCACAAGCACTGAGGTTTCTCTTAGTTTTTGTTCCACTCCTGCATAAGTGGAAGATACTCCCTGATCCATCTCTTCCAGAAGAGGTGATATATTGTACTTGCTTCCATCTCCATCATGAGTGTAGATCTCCTCTCTGGAATTGTCCTGGTGGTAGGACTGGCTTTGTTTTCAGATGAAGCTGATGGTAGCAGTCAGGGGTTCTAGATCATTATGGTCATTTGTTACAGTTGTGATTGGTCTGTTGTTCATGATCACCTCAACTTCTGCAAAGCCTCATCATCCAGTACTTGCTCTTTAGGGACTGAATAGAGGATCTTTTTCCACCAGTCTGCTCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACAGATCAACCTCTCCCATAACCCCCATGGTGGGCTCCAGAGGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTACAGACGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGAGGGATCAACCTCTCCCATAACCCCCCATGGTGGGCTCCAGAGCGAGGGTTGAATAGCCATGTTACTCCATCCTTCAGTAATTCATTTGAATCTTGTTGTGTTCCAGCTCTACCAGAGCTTCTCCTAGCTCTCTGTGTGTTCCAACAAAGTTGGTGCCGTTGTCTGTTTTGACACTTGTTACTGAGCCCCTTCGACAGATGAACCTGGGCATTGATACAGGAATCAGTATCCAGATAACTAGCAACTTCTAGATGGACAGCTCAACTCACTAGGTAAGTAAAGATCCCACCATACCATTACACATGAACGCGGCCTCGCTTCACCTCTATGGGGCTGAAGTAATCTATGCCCACATGGGTGAATGGCAGCAAATCAGGTGACACCCGATCTTGTGGAAGGTTGGCCATCTTCTGTTCTCCAGCTCTAGCTTACATCACCTGCATAAGACACATCTCTTAAGGATCATCCTTGCTAAGAGTTTGGCACAGGGTATCCAATATTGCTGGTGAAGTATGGAAAGCATGTGACCTCTCCTAGAGTGGCCAACCTGCTCATGGATGTGGAATAAGATCAGTCTGGAGATGTGGGAGTCTTTGGCCAGGATCGTAAAAGTCTTTAGTTCCGTAGGCATAGCAGCTTTGCTTAACCTTCCTCCCACTCTCACGCTTTTACAAACGTCAGTTTGAACTTGTCAATTTGAAGGGCAGGTGTCTGGTCTCTTTACTTTGAATGTTTGTTCTTTTAAAATTTTTTTAGAGTTGCAAACTGACTCTACATCTACTGCAGTGGCAAAGCTGCTTCCCCTACTCTTGGACTTGAACTGCTGTTTAGAATCTGCTGATGTTTAGTTTTTTAAAAAACCTTTTGTTGGACAGGGGATATTGAATATCTCCATACAACGTATCCTGCAATATTTTGGCCTGTTATGTTGGAGGGAAGATTAAGCTCTTCCATGTTCTGTAGGTCTTGCATAGCgttacaacaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctagatagagtacatagcattacaacaacctagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacctctatgatagagtgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532797 lncRNA upstream 450 6279795 ~ 6309385 (+) False G468768
TU532799 lncRNA upstream 48356 6257968 ~ 6261479 (+) True G468770
TU532791 lncRNA upstream 77986 6229299 ~ 6231849 (+) True LOC110510500
TU532785 lncRNA upstream 81052 6227942 ~ 6228783 (+) True G468764
TU532770 lncRNA upstream 100130 6205082 ~ 6209705 (+) False G468754
TU532829 lncRNA downstream 270 6372143 ~ 6373052 (+) True G468794
TU532830 lncRNA downstream 10696 6382569 ~ 6386729 (+) True G468795
TU532831 lncRNA downstream 19110 6390983 ~ 6391254 (+) True G468796
TU532616 lncRNA downstream 31028 6402901 ~ 6447019 (+) True G468636
TU532621 lncRNA downstream 36521 6408394 ~ 6466268 (+) True G468641
XM_036979286.1 mRNA upstream 78435 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 136424 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 161836 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 51268 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 110139 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 237048 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 311034 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 339021 6710894 ~ 6713091 (+) False ccl19a.2
TU532773 other upstream 65334 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 110680 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 153154 6108379 ~ 6156681 (+) False G468732
TU532821 other downstream 5766 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 51541 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 179104 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 300635 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 300635 6672508 ~ 6674387 (+) False G468887

Expression Profile