RNA id: TU532627


Basic Information

Item Value
RNA id TU532627
length 3143
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G468647
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6302128 ~ 6333859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTCATTACATCATTTAATGAAATACCATACATCATAATGGAATGACTGTTCATCATATTCATTACTTTGTATATCTAGGGAAAGGGATGTAAGCAGTGCTACTATTGGAACAGTCTAAACATCACAGAATGATTCATACTGGGACATCAAACTGAATTCAAGATGATTCTATTTTTATTTTGGAgtgtgaaatgttgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatataatgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatgttgacctctgtggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatatagtgggaggactatgtgaaatgttgacctccatcgcagatatatagtgggaggtcTATGTTATGAAAATTCTGGATAATTTGAAGAACATCTATACATCTTAATCCAACCTACCTTGAGAACATTTTGGGAGAGTATTGATAAATGTAAAGAAACGGATTTAATTTGTAGCCTTGAAGAAGACCCACTGCTGTTCACAAGGCCTGTAGTTTTTATAGTATCAGATTAACACTCTGGTCTGTTCTTTGTCTTGTGTTATTGGTTGTCaataaacaaaacagacaaataaGTAATTACTCACCCCgaactgatcatccattatccaaGATGGAGGGTCATGAATAATGATCATGTAAAACAGAATGCATTAGTTATTATTGTTCATTGAATGTCTGTCTCATTACATAATTTAATGAAATACCATACATCATATTGGAATGACTGTTCATCACATTCATTACTAATGTACATCTAGGGAAAGGGATGTAAGCAGTGCTACTATTGGAACAGTCTAAACATCACAGAATGATTCATACTGGGACAACAAACTGAATTCAAGCTGattctattttcattttggagtgtgaaatgttgacctctatagcagatatatagtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactatgtgaaatattgacctcaatgccagatatactgtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactatgtgaaatattgacctcaatgccagatatattgtgggaggactgtgaaatattgacctcaatgccagatatattgtgggaggactgtgaaatattgacctcaatgccagatatattgtgaaaggactatgtgaaatgttgacctctatggcagatatatagtgggaggactatgtgaaatattgacctcgatagcagatatatagtgggaggaaaatgtgaaatattgacctatATGCCTGATATAtaatgggaggactatgtgaaatattgacctctatagcagatatattgtgaaatggaaaggaaagggggattccaagtcagttgtccaactgaatgtattcaactgaaatgtgtcttccacttTTCACTCAACCCCTCTGAAATGTTGACCTCGATGGCAGATATATTGCGGGAGAACTATGATATGAAAAGTCTGGATAATTTGAAGAACATATTTACATCTTAATCCAACCTACCTTGAGAACATTTGGGGAGAGTTTTGATAAATGTAAAGAAGCTGATTTAATTTGTAGCCTTGAAGAAGACACACTGCTGTTCACAAGGCCTGTAGTTTTTATAGTATCAGATTAACACTCTGGTCTGTTCTTTGTCTTGTGTTATTGGTTGTCAGtaaacaaaacagacaaataaGTAATTACTCACgtgggactgatcatccattatccaaGATGGAGAGTCATGAATAATGATCATGTAAAACAGAATGTATTAGTTATTATCATGACCTTCAAATCACCATCTGTCACATGATCCTCTCAAATACCATAGTGATGTGATGTTCATCAGAGGGGTGTGAGTGTTCATCACATTCATTACTAATGACAATCAAGGGACGTGACAGTAATGTTGGAATGGTTCTAATGCTTTAGGACCAGCTCAAAGCTCAGAGTGATGGTAATATGCATTGTAACTAGTTGATATTCAGAATGAATCTAGTCTATTCATCTGTAACTCCTACCTACATGAGAAAGTACAAGTGTTCTGTACAGGGAAAGAGActggttgttattgttgttgtttaggtGTTTAGAAACATTACTGGAGTTCTAGAACACTTACCTCCTCTGTCCAATAAACCCACTGCAGCCTCCTCCTTCTGTTCTCCATGGATGACCTGACAGATGTAGACTCCTGTATCTGGCCTCCTGAAGTCTCTCAGCCTCAGAGACACGCTGCCTCTCTCCAGCTCCTGGGTGATCAGACTCACTCTGCCCTCATAGCCACTCCTCTCTGTCACCTGGCCATTCTTATACAGGTAAATACACTCTGTCCCTTTAAACCACCTGATCGTCGTGGCAACAGCACTGGTGTCAGGTGAGAGGTGACAGGGGAGGGTGACCTCTTCACCAACATCAGCCCTCACATGGTCTTCTGATGTGAGTTTAAACTGATCTGTTCAGAAAGAGAGAACATTTCATGTTTAATGACATCATCTGTGTCAGGAACACAAATCCTCTCAGTACATTTATAAACACAGCTGAATTAAAAACTACAACAGACATACAACAACCAGGACCATGTCAATTCTAAAATACAACCCCCACAatcccagacagacagattcaTTTGAAGGAAAGTCTATATGTCATAGAAGAATGTGATGCTACAATCTAGAATGATATTATCCCATTTGTTCCCACATCTTTCCCAGACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532799 lncRNA upstream 40649 6257968 ~ 6261479 (+) True G468770
TU532791 lncRNA upstream 70279 6229299 ~ 6231849 (+) True LOC110510500
TU532785 lncRNA upstream 73345 6227942 ~ 6228783 (+) True G468764
TU532770 lncRNA upstream 92423 6205082 ~ 6209705 (+) False G468754
TU532818 lncRNA downstream 3094 6336953 ~ 6365890 (+) True G468789
TU532798 lncRNA downstream 4480 6338339 ~ 6368451 (+) True G468769
TU532642 lncRNA downstream 10137 6343996 ~ 6345224 (+) True G468662
TU532820 lncRNA downstream 16237 6350096 ~ 6379704 (+) False G468791
TU532822 lncRNA downstream 16237 6350096 ~ 6379269 (+) False G468791
XM_036979286.1 mRNA upstream 70728 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 128717 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 154129 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 89282 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 148153 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 275062 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 349048 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 377035 6710894 ~ 6713091 (+) False ccl19a.2
TU532773 other upstream 57627 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 102973 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 145447 6108379 ~ 6156681 (+) False G468732
TU532821 other downstream 43780 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 89555 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 217118 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 338649 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 338649 6672508 ~ 6674387 (+) False G468887

Expression Profile