RNA id: TU532798


Basic Information

Item Value
RNA id TU532798
length 1395
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G468769
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6338339 ~ 6368451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACATTCAATGAGATCCAGGGATATGGTGCAACAAAAAGGTTTATTCTTATTATATCTCACAAAAAAACATATTCTCCCATCAACTTAAAGCATAGATTACTTCACGTGAAAAATACATAATATGACCTGTTTGTTGTCTGGTTAAAAGACTATACCACTCCCGTGTCTAGCTAGGACTCCCCCTCCCCCGAAGGCCCAACTTCCTGTCTTTATCCTGTCGCTAACACACTGACCACAGTACAATGAATGGTCAAGAGGAGGAGCTAAAACCTAAGGTACACTTATAACAAAGGAATATATCTCAATGAGGTCAATATAAATCATCAAGGTACCTGATATTTCATCATATACATTCATATTTCATATATTTACACACCTTTACATGGAGCTCTGTATGTTCTGTCTTTTATAGAAATATGTCCACATCGGCTCTAACATACCGGCCCATAATTGTTAACAGCACTGAAAACATTACAGTTActtaatatttaaaaaatagaGCCAATTCACAAAACATTCTATACCAGAGCACTATTACGGTTCATagctacactaccgttcaaagtttggggtaacttagaaatgtccttgtttttgaaagaaaagcatttttttttgtccattcaaataacatcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggctgatttttaatggaatatctacataggtgtacagagaaCCATTATCAgcaaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaaggctaactaatcattgtaattatgttagcacagctgaaaactgttgttctgattaaagaagcagtaaaactggccttctttagactagttgagcatctggagcatcagcatttgtgggttcgattacaggctcaaaatggtcagaaacaaagactttcttctgaaacttgtcagtctattctggttctgagaaatgaaggctattccatgtgagaaaatgccaagaaactgaaaatctcatacaacgctgTGTACTTcaaagaacagcgcaaactgtctctaaccagaagagaaagagtgggaggccccggtgcacaactgagcaagaggacaagtacattagagtgtgtagtttgagaaacagatgtctcacaagtcctcaactggcagcttcaccCCATAATggaagagttgcaaagaaaaagtcatatttctgtccagtgtctgtgttcttttgcccatcttaatctttcctttttattggccagtctgagatgtggctttttctttgcaactctgcctagaaggccagcatcctggagtcgcctcgtcactgttgacgttgagattggtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532627 lncRNA upstream 4480 6302128 ~ 6333859 (+) True G468647
TU532814 lncRNA upstream 21972 6293208 ~ 6316367 (+) True G468785
TU532797 lncRNA upstream 28954 6279795 ~ 6309385 (+) False G468768
TU532799 lncRNA upstream 76860 6257968 ~ 6261479 (+) True G468770
TU532791 lncRNA upstream 106490 6229299 ~ 6231849 (+) True LOC110510500
TU532829 lncRNA downstream 3692 6372143 ~ 6373052 (+) True G468794
TU532830 lncRNA downstream 14118 6382569 ~ 6386729 (+) True G468795
TU532831 lncRNA downstream 22532 6390983 ~ 6391254 (+) True G468796
TU532616 lncRNA downstream 34450 6402901 ~ 6447019 (+) True G468636
TU532621 lncRNA downstream 39943 6408394 ~ 6466268 (+) True G468641
XM_036979286.1 mRNA upstream 106939 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 164928 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 190340 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 54690 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 113561 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 240470 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 314456 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 342443 6710894 ~ 6713091 (+) False ccl19a.2
TU532773 other upstream 93838 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 139184 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 181658 6108379 ~ 6156681 (+) False G468732
TU532821 other downstream 9188 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 54963 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 182526 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 304057 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 304057 6672508 ~ 6674387 (+) False G468887

Expression Profile