RNA id: TU532642


Basic Information

Item Value
RNA id TU532642
length 1180
lncRNA type intronic
GC content 0.43
exon number 2
gene id G468662
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6343996 ~ 6345224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacaacaacctctaagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagcattacaacaacttAGATAGACTGCaaagcattacaacaacctagatagagtgcatagcattacaacaacctagatagagtgcatagcattacaacaacttAGATAgactgcatagcattacaacaacctagatagagtgcatagcattacaacaacctctaagatagagtgcatagccaCCCAGTACCTTTCCATCATCTGGTTTGATGTTTGTCCAGTTCCTTTTTCCATGTTAGTAGTGGTGACTTTGATTTCATTGCCAAAGTGTTCCTTTAACAACCTCTTAGACTCCGCGTTGCCTCTTCTGCCTTCTATATGCAGACAACTACAGACCAGATCCTTGGGCTGACCAGAGGTGTACTGTTCCAGGTAATAGAGCCTATCCTGGTGACTGCTGACCAGAGGTGTACTGTTCCAGGTAACAGAGCCTATCCCGGTGACTGCTGGTCTTCTCTTCTATGCCATGCTCAAATGCACGCATGAATGAAAACATAGGTATCTCCCTAACAGCGAGTGTAGCCTGTTTGTGCTGTAGTACAAGGAGGTCAGCAATTTCATTCTGCTTTTGCatgacagtagagaggttatcaTGGCTGGTATTATGGCTGATACTGTCGTAGAAAATCGGTTCAAATATGACACTTGCAAGAACTTGTGAAatcaatataggcttttaatacaacGGAAAGCAAGCCGGagtggtccgcggaacacacgCCTTTTTCAGAGCACTGGCTctgatttatacacatacaacatatgagtccatcccacatgcaaatgaagttacttccctcagtccatctgccaccattatatcccaatctgtgcatcctgcttgttcagctcgataacgcccatatctgctttcagtCAAGTTATAATGGTGACAGGACCTCTTCATGTCCCAAAAATAATACGTGCCtattgttacggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaacataggtaggctcagatagaccggcagattccgacaggacaggacaaggttacagcaaacatgacgatagtctggctcaggcatgaaacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532795 lncRNA upstream 381 6282151 ~ 6343615 (+) False G468768
TU532627 lncRNA upstream 10137 6302128 ~ 6333859 (+) True G468647
TU532814 lncRNA upstream 27629 6293208 ~ 6316367 (+) True G468785
TU532797 lncRNA upstream 34611 6279795 ~ 6309385 (+) False G468768
TU532799 lncRNA upstream 82517 6257968 ~ 6261479 (+) True G468770
TU532820 lncRNA downstream 4872 6350096 ~ 6379704 (+) False G468791
TU532822 lncRNA downstream 4872 6350096 ~ 6379269 (+) False G468791
TU532823 lncRNA downstream 4872 6350096 ~ 6379704 (+) False G468791
TU532824 lncRNA downstream 4872 6350096 ~ 6379704 (+) False G468791
TU532825 lncRNA downstream 4872 6350096 ~ 6379269 (+) False G468791
XM_036979286.1 mRNA upstream 112596 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 170585 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 195997 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 77917 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 136788 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 263697 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 337683 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 365670 6710894 ~ 6713091 (+) False ccl19a.2
TU532794 other upstream 381 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 99495 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 144841 6194772 ~ 6199155 (+) True G468643
TU532741 other upstream 187315 6108379 ~ 6156681 (+) False G468732
TU532821 other downstream 32415 6377639 ~ 6379269 (+) True G468791
TU532790 other downstream 78190 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 205753 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 327284 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 327284 6672508 ~ 6674387 (+) False G468887

Expression Profile