RNA id: TU532820


Basic Information

Item Value
RNA id TU532820
length 1683
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G468791
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6350096 ~ 6379704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaTCTTATGCTATGGGCCCCCTTACGTtcagcctggtgtgttctttggtaTGTCTGTCCTTATTAGGATTCGTAGACTATGTGTCTCTACTGACATTCCTTCAGCATCTCCATGTCCTAAAAATATGAGGCCTATTTCTATAGTCCATCagttggtcatttggctgaccccctcctttgtATATCCCTCTGACCTTGGTATGTCCAGCTGTCCTAGGCGCCTATGTGTCACCTTCTCTTCATGTGGTTATTTAAGATCAGCAGACTATGTGTCTCCATCTTTAGTGTGTCCAGTTGCCCTAGGCGCCtatgtgtttgtctatgtgtttTATTTGCTCCCACAATACCCATAGTGTTGATTCTGTGTTGATTGCTAGACCTTGCTGTTGGCTGCTGAGGGATGGGGTTTATGACTGTTTTCTGAATAGGTTTTGATGTCTTTGTTGTCGTTTGTTGTAAAACCCTTTGTAGTGGGATCTTTGGAACTGCACCTAATGCCGCAAACTCATCAGGTGATGGTTCAGGTTCCTCATAGACCTCAGGTTCCTGGTTctcaaaataagtgttcattccaTCTGGTTGGTTTAGTAAGTGGGCTGCCACAGCATGGGATTGAGAAGTTGACTCAACACTCTCCAGGACATTCAGTCTGACATTATATGCTGCTGTGTCTGTTTCCAGTTCCATTTTTCCATTCTAACATTCAGTTGATCTTTTCGAGGTGCAGAGGACACTGAGGATGACGCAGCCTTACAATACTTTGTTTTACTTGATGtttttgacacattggaaatgcTGTCATGTGGTTCAATGAGCGTTTGTGGCTCAAATACAGCATTTTTCCATATTTCCACCTCTTCAGGAAATGTTCTTAAGTCCTCATTCTTGGTTGATAATAGTTAATGCTCTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATGTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATCAGCATTCTGAAAGTCATTTCCTGTTCCGCCTCTGTGATCAGCTCTAGTACCGATTCATCAGCATTCTGAAAGTCATTTCCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTTCCTTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTAATTTCCTGTTCCTCCTCTGTGACCAGCTCTAGTACAGATTCATGAGCATTCTGAAAGTCATTCAAGATGCTCTAGTAATATTTTACTAAATacATATACTGGGACATCTTTTAACACTTTCCTCACAGTAACACACATGTTCAGTCTATATTCGTCTTATGAAACCAATTATTTATTCATTTCTGCCCTGAAAAATCTGTTCAGTTCCTCCACATTGAAATGAATGGCGGCCAACTTGAAAATAGGCTGCTGTGACTGATTTTACACTGAATCCATGATGACTCTATGAAACCTTTCCAACGTGTCTCCTTGTTCTGTGGAGAGTTTGTTGTAGTTATCATCTATGGTACGATGTGATAACAAAGCACATCCCAATGCTGCCCATTCTGTCTCATCAATATACCCCAAAATGCATACAGGTATGACCTTTGACTCCCCAAGATGGACCCATGGAGATGTCATTAACATTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532642 lncRNA upstream 4872 6343996 ~ 6345224 (+) True G468662
TU532795 lncRNA upstream 6481 6282151 ~ 6343615 (+) False G468768
TU532627 lncRNA upstream 16237 6302128 ~ 6333859 (+) True G468647
TU532814 lncRNA upstream 33729 6293208 ~ 6316367 (+) True G468785
TU532797 lncRNA upstream 40711 6279795 ~ 6309385 (+) False G468768
TU532830 lncRNA downstream 2865 6382569 ~ 6386729 (+) True G468795
TU532831 lncRNA downstream 11279 6390983 ~ 6391254 (+) True G468796
TU532616 lncRNA downstream 23197 6402901 ~ 6447019 (+) True G468636
TU532621 lncRNA downstream 28690 6408394 ~ 6466268 (+) True G468641
TU532788 lncRNA downstream 48593 6428297 ~ 6488418 (+) False G468765
XM_036979286.1 mRNA upstream 118696 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 176685 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 202097 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 43437 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 102308 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 229217 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 303203 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 331190 6710894 ~ 6713091 (+) False ccl19a.2
TU532794 other upstream 6481 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 105595 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 150941 6194772 ~ 6199155 (+) True G468643
TU532738 other upstream 193415 6155447 ~ 6156681 (+) False G468732
TU532790 other downstream 43710 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 171273 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 292804 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 292804 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 292804 6672508 ~ 6674387 (+) False G468887

Expression Profile