RNA id: TU532830



Basic Information


Item Value
RNA id TU532830
length 261
lncRNA type intronic
GC content 0.52
exon number 2
gene id G468795
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6382569 ~ 6386729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcttggtcccaggctggggtcataataactaaaggctgtctctccatgcctcttggtcccaggctgggggcataataactaaaggctggggacataataactaaaggctgtctctccatgcctcttggtcccagactggggacataataactaaaggctgggggcataataactaaaggctgtctctccatgcctcttggtcccaggctggggtcataataactaaaggctgcctctccatgcctcttggtcccaggctgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU532820 lncRNA upstream 2865 6350096 ~ 6379704 (+) False G468791
TU532823 lncRNA upstream 2865 6350096 ~ 6379704 (+) False G468791
TU532824 lncRNA upstream 2865 6350096 ~ 6379704 (+) False G468791
TU532822 lncRNA upstream 3300 6350096 ~ 6379269 (+) False G468791
TU532825 lncRNA upstream 3300 6350096 ~ 6379269 (+) False G468791
TU532831 lncRNA downstream 4254 6390983 ~ 6391254 (+) True G468796
TU532616 lncRNA downstream 16172 6402901 ~ 6447019 (+) True G468636
TU532621 lncRNA downstream 21665 6408394 ~ 6466268 (+) True G468641
TU532788 lncRNA downstream 41568 6428297 ~ 6488418 (+) False G468765
TU532844 lncRNA downstream 43419 6430148 ~ 6431789 (+) False G468802
XM_036979286.1 mRNA upstream 151169 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 209158 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 234570 6112482 ~ 6147999 (+) False LOC110510489
XM_036979285.1 mRNA downstream 36412 6423141 ~ 6428139 (+) True LOC110518225
XM_036979284.1 mRNA downstream 95283 6482012 ~ 6488606 (+) True LOC118964815
XM_021605151.2 mRNA downstream 222192 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 296178 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 324165 6710894 ~ 6713091 (+) False ccl19a.2
TU532821 other upstream 3300 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 38954 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 138068 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 183414 6194772 ~ 6199155 (+) True G468643
TU532738 other upstream 225888 6155447 ~ 6156681 (+) False G468732
TU532790 other downstream 36685 6423414 ~ 6488418 (+) False G468765
TU532896 other downstream 164248 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 285779 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 285779 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 285779 6672508 ~ 6674387 (+) False G468887

Expression Profile