RNA id: TU532790



Basic Information


Item Value
RNA id TU532790
length 911
RNA type TUCP
GC content 0.45
exon number 4
gene id G468765
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6423414 ~ 6488418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCAGCCGACCACAGCCAACACAGACTCAAGATGCCTTTCAAGCCACACTACCTGTTGGTGTCCCTGACTCTCTGCTGGTTCGTGGCTCTTCAAGCATTCCCCATGAACGGCTGTGCTGCATGTCAGAAGTGTCGCTGCATCCGGACGTCCTCTGCTTTCATCTCTCCTCGGCTGTTCCACAGGATAGAGATCCTACCTCCAGGTGCCCACTGTCGTCAAACAGAGATCATCGTTACCAAGAAGGACAAAGCCACCGTCTGTGTGACTCCAGATGCACGATGGATCAACAAAGTCATTGTCAAGTTACAAAGtaccaacaagaagaagagaagTGTAGAACTTCCCCATCTCAACCACCATTGAGTGAATTGGAACAGGAATGTATCAAGTTGGAGCTAAATGGAAATGTGATACCAATGTGATACCAATGTGATACCAATGTGATACCAATGGATTCTATTCAAATACGATTCCAATACCAAGTTAATTTGTTTATCTGAAATGATCTCAGTATGTattgttaggttcttatttttcagagtaaataacccttggacactagagaagctttaaccaagtgtAATTCTTCCCAgaggttctgtacagctgtaattcagacaacACAACATTTGTCCCACCCAGATATTTATATCCCACTTAttaagacactcctccttctcttcaaTCCTTTCATTTTATGGttctacaggaagagagaaaaaagggAAACAGGAAACCAAACCTTTATTACTCCCTTCAGGTGAcctgtcctcacctcctgacctcaacccctccttcacctaatccacagatgtccatctgtctcccctgtTTCACACTTTGCTCTCCTCTCGTCCCCCAACACATTCCACCGCTATCTGTCTTTCTACAGAGACCCAGTCTCTTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU532629 lncRNA upstream 20597 6323223 ~ 6402817 (+) True G468649
TU532831 lncRNA upstream 32160 6390983 ~ 6391254 (+) True G468796
TU532830 lncRNA upstream 36685 6382569 ~ 6386729 (+) True G468795
TU532820 lncRNA upstream 43710 6350096 ~ 6379704 (+) False G468791
TU532823 lncRNA upstream 43710 6350096 ~ 6379704 (+) False G468791
TU532868 lncRNA downstream 6520 6494938 ~ 6495684 (+) True G468820
TU532619 lncRNA downstream 13500 6501918 ~ 6504478 (+) True G468639
TU532872 lncRNA downstream 19484 6507902 ~ 6523525 (+) True G468822
TU532894 lncRNA downstream 62559 6550977 ~ 6553095 (+) False G468841
TU532898 lncRNA downstream 62559 6550977 ~ 6553095 (+) False G468841
XM_036979286.1 mRNA upstream 192014 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 250003 6166943 ~ 6173411 (+) False LOC118964813
XM_036979257.1 mRNA upstream 275415 6112482 ~ 6147999 (+) False LOC110510489
XM_021605151.2 mRNA downstream 120503 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 194489 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 222476 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 231462 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 262563 6750981 ~ 6771402 (+) True LOC110525076
TU532821 other upstream 44145 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 79799 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 178913 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 224259 6194772 ~ 6199155 (+) True G468643
TU532738 other upstream 266733 6155447 ~ 6156681 (+) False G468732
TU532896 other downstream 62559 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 184090 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 184090 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 184090 6672508 ~ 6674387 (+) False G468887
TU532983 other downstream 184090 6672508 ~ 6674387 (+) False G468887

Expression Profile