RNA id: TU532619


Basic Information

Item Value
RNA id TU532619
length 2157
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G468639
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6501918 ~ 6504478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTGTGTCTCCTCCTGACTGGGAGTATGGAACCTGTATCTGACGTCTCTCCATGTTCTAGAATAATAGAACAACCATTTAGAATGGGACCATTTACCTCAGTGACACATGAAGGCACATAGACCTACTGAAGGGGAGTTCTGGGTTTCTCCTGAAATGTTAAGTATCACATATCTCACTCACCAGTCATCTGGGCTGAGATctctcttctcagtctctctacctcagtCTTCACATCACATATCTGTTGAGCTGAAATAACAAAGGAGGACTAGGATCTGAATTCTGTGTTAAAGACTTTAGACAGAAATATGATGCAGAGGGAAAGTATGAAGTGATGGACAACAATATTCACAACTCAGTGGAGAGTCGACAATAACCTGAGAATTGAGGAAAGTACAGAAGACTAAATGTATTAATGGTGTGAATAATCTCACCCAGTTCAGCATTTTCATTGTTGACATCCTCCacctgtttgtctctctcctttaactgcttctctctctcctctagtagGTTGTCTTTCTCTTCtacttcctgtctcctctcttctacttcctgtctcctctcttctacttcctgtctcctctcttttaGTTCATTTTCTTTTCCCTccagtagtctgtctctctcttccagtagtttctctctctcttccagtactttgtctctgtcttccagtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAATGTCTCTATCCTTTAGTTGTTTGACTCTCTCTTCTAGtagtctgtccttctctcccagtCTGTGGTTCCTGTCCTCTAGTTGAAGGTCTTTTTCCTGCAGTAGGACTCTGAAGTTCTCTACTTGGCTGTTCTTGTCCTGCAGGTTCTTTATCAGAGCCTCTAGTTGAATGTCTCTATCCTTTAGTTGCTTGTCTTTCTCTTCCAGTTGCTTGTCTTTCTCTTCTAATAGTTTCTCCCTCTGTTCCATTATCTGGTTCTTCTCCTCCAggagtctctctttctttctcacttccTGGGTCATATCATCCagttgtgtgtctttctctctcacttcctggGTCATATCATCCAGTTGTTTGTCTTTCTCCTCTAGTTGATTCATCATCTCTTTAAACATCTTCAACTCTGAGAGCAATTAACATATTTAATTGGTTGCTTGAATAAGTAATGTATTAATTAATTCAATAGTATGTCTATAAAGACATTATCATTTGATGGAGGTGGTACAATTATTAGTAATTATTTCCTCCAGTCAACAGTTATCTGAGCTGAACCAATCATCAACTGGTCTATTGACTATTTGATACATTATAAATGAATTAGTCTGAAAAACTGAATGACATCACTCATGTTCCCTGATtcaatcctctctcctccagactCTCTCATACTTACCAAGCTCACCAGCTGATGCCTCCCTCTTCAGCTTGATCTCCTGGGTCTCACGTTGTAAATACCGTGATCCTGAGTCTATGGTGTAAAACAGAGAGGTGAGTTCTGTGTGGTAGACGACATCACTATATACAGAAGAAACAGGACCAATCAGATTTCTCCTGTCACTCAAGCCTAGTTTGTGATAACCAGCATTGGGCTCTATGTCAGATACAGGATATTGTGTCAGGAGGCAGGGTTCTATGGAATATACATTCAGTAGAATGTGAAGAACATATGACATCATAATACAACCTACCTTGAGAACATTTGGGGAGAGTTTTGATAAATGTAAAGAAACTGATTCCATGTTCATTTTGGAGTGTGAAATGTTGTtctctatggcagatatatagtgggaggactatgtgaaatattgacctctatagcagatatatagtgggaggactatgtgaaatattgacctcaatgtcagatatattgtgggaggactatgtgaaatattgacctctatgacAGATATATAGTgtgaggactatgtgaaatattgacctctatagcagatatatagtgggaggactatgtgaaatattgacctctatggcagatatattgtgaaagggaaaggaaagggggatacctagtcagttgtccaactgaatgtattcaactgagatgtgtcttccgcatttaactcaacccctctaAAATGTTGACCTCCATagcagatatattgtgggagaactatgtgaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532868 lncRNA upstream 6234 6494938 ~ 6495684 (+) True G468820
TU532788 lncRNA upstream 13500 6428297 ~ 6488418 (+) False G468765
TU532872 lncRNA downstream 3424 6507902 ~ 6523525 (+) True G468822
TU532894 lncRNA downstream 46499 6550977 ~ 6553095 (+) False G468841
TU532898 lncRNA downstream 46499 6550977 ~ 6553095 (+) False G468841
TU532903 lncRNA downstream 46499 6550977 ~ 6553095 (+) False G468841
TU532904 lncRNA downstream 46499 6550977 ~ 6553022 (+) False G468841
XM_036979284.1 mRNA upstream 13312 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 73779 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 270518 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 328507 6166943 ~ 6173411 (+) False LOC118964813
XM_036979258.1 mRNA upstream 353919 6133745 ~ 6147999 (+) True LOC110510489
XM_021605151.2 mRNA downstream 104443 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 178429 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 206416 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 215402 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 246503 6750981 ~ 6771402 (+) True LOC110525076
TU532790 other upstream 13500 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 122649 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 158303 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 257417 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 302763 6194772 ~ 6199155 (+) True G468643
TU532896 other downstream 46499 6550977 ~ 6553095 (+) False G468841
TU532978 other downstream 168030 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 168030 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 168030 6672508 ~ 6674387 (+) False G468887
TU532983 other downstream 168030 6672508 ~ 6674387 (+) False G468887

Expression Profile