RNA id: TU532908


Basic Information

Item Value
RNA id TU532908
length 3284
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G468841
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6550977 ~ 6557058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTAATACACGGTTCAACAAGGACGACGACAGTAGAGGCCTAAAGTGGTAAAAACACTCAAAATAGTTTTGAAAAGGTTTAAATGACATCAAGTGGTTATAGGTATGAGTATGAGGACGATAAAGATTATAAAGCTGTGGTagtaaacaggaagtggaaacaCTGTCTAACGAAGTCCAGAGACTTACggaactatgtgtgtgtgtgtacacgttaaACAGCCAAAGGTTGGTTAGATACACATAGCTCTACTCCAATAAAACActtattttttttttgcttttaaaTTCATTTCAACATCTGTTTGTGAGTGAGGAGTTAGTTTGGAGACATCAAAAAAGGTAGAAAGCGACATGATTTCCCCCCCTCTACTCTCTTTGTCCTGATTAAAAGAATCAGCTAGTGTTAGCCCTGTAAGTGAGTAGAGATACCTAGTGAAGGCACTACAAATAGAGAACTGTTACAACCTGACAACCACCGCATCTACAGAGAGACACACTCCTCCAAAAACAAACCACACAGGAACACTGATAATGAATGACTACACTGCTAATTCACACATCTGATTCACACATCTTGTGCTGATTCAACGAGACAAGAAACAAAAAGAGATGCAAAGACTAATTGCATTTGGCACAAAAGTTCTTTAAAGAGGTTTAACCAACTCTCTTTCTCGAACCCTCACGGTACGCTCTCACTGACTCAAAAAAAAACTGAAGTGCGGCCATCTTGGATTTCACCCTCAAAACCAAATCCCCGATCCAGACATTTTTAACACTGATAATGCCTTGAAGAAGTGAGGCCAGGATATATTTCATATCCATGGACAGAAGGCTGATTGGTCCGTAATACTGATATAGGTGGGAAAGTTACACTGCTTGTGTTCTTGCTGGACACAGTGTTTTGACATCATGTTTAAAAGGCAGAAAATAAAACGACAGAAACACACATCACACGTGTGAACAGTACAGTGCACACACACCTTGGCGTACAgttcacgtgcacacacacacacacacacacaaaatggcaCATATCACGCATCATATCAACAGGGGTAAAAGTGGTTTGAGGTATTGCCATAAATGACCCATCTAGTTTACCTCTTGTTTTAGAACAATCCAAGAGGATGAATCCTCTCAGCCCTTTCAATCCAAGATGGTAGGAAACTGAATAATTCTATCACACCCGTCTGAAATAAAACCTGAGGCATGGATGACAGCATTCTATCCCTTAGCTTGTAACAGAGATACCAAAGAATTGGTGACGCTaagagaaatggagggagtaTGTTACAGACACCAACAGAGTTTTACATCCCTTATATGAGGgctgtccaaccctcttcctggagatctaccgccCCTGTGGGTtgtcagtccaaccctcttcctggagatctaccgccCCTGTGGGTtgtcagtccaaccctcttcctggagatctaccgccCCTGTAGGTtgtcagtccaaccctcttcctggagatctaccgtccctGTGCGTtgtcagtccaaccctcttcctggagatctaccgtccctGTGGGTtgtcagtccaaccctcttcctggagatctaccgtccctGTGGGTTGTCAGtttaaccctcttcctggagatctacagtCCCTGTGGGTtgtcagtccaaccctcttcctggagatctaccgtccctGTAGGTtgtcagtccaaccctcttcctggagatctaccgccCCTGTGGGTtgtcagtccaaccctaatttaacacacctgattatattaattagctgctcaacaaagACGTTAACAAGCTGAATCAGAAccgctaaattagggttggactgaaagcctacaggacagtagatctccaggaagagggttggactgacaacctacaggacagtagatctccaggaagagggttggactgaaaacctacaggacagtagatatccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaactgaaaacctacaggacagtagatatccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaaCTGAAAACCTAGatgacagtagatctccaggaagagggttaaaCTGAAAACCTAGATGACAGTAGATcttcaggaagagggttggactgaaaacctagatgacagtagatctccaggaagagggctGGACTGAAAACCTAGatgacagtagatctccaggaagagggttggactgaaaacctacaggacagtagatatccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaaCTGAAAACCTAGATGACAGTAGATcttcaggaagagggttgggcagctcTGCATTACGTCTCCTGACGAATCCAGAAGGACCTTATTGAAGCACACTGGATTCTGACCATTGGCAGAACCATAGTAGAAACTATTAGTCTGTGCTAAGACTTGTTTTGTTATGAACAGAGCTTCTCCAGTCCAGTTGAATATCTGTTTCAGCACCAGTGTTGATTCAAAAGGCTGACCACAACACGCAGTGACCGAGAAGTTTGGCACCGTCCCGTCATTACATAATAAATACTGCCTTTTAAATCCAGTCCAATTCCTGCCCACATGCACTGTGGGTAGCAGCAGCAGACTTCCTGTCTCACTGCCCCTGTGTGTTCTGGGAGTTGGAGGCCTGGGCTGGCACtccggggtgaagtttcccctaggtacagatctaggatcagcggtgatccccccctcccccctccccccaattctaaccttaaccattaataCAAAACTTACCCCAGATCAGTGCCTAGGGACAACTTTACCCTACTCCTGGGCTGGCCCCTCAGTAGCAACAGCGATGTTGCTCTGGTCCTGGAGCAGTAGCTGTGCAGGaggacatagaaacaccaccatGACAGTGATGTTATCACTAGAGCCCGCTGCCTTGGCGTGAGCTACTAGCTCCTGGGCCACTCGCTCCCCTAGTACACCCTCTGAGATCTCTTCACACCCGGCCCCCTCCACGGCCCCCTGGGGTTCCCCCTGCTCCCGTAGCGCCCCGAGAACCAGAGCCGGGACCTCTGCGGGCCGGACGACGTCAAAGAAACCGTCGCAGGCCAGGAGGATGTAGTCCTCGTCTCCGTGTAGCCGTGTGGAGGAACAGTCAGCGTCGCCAGAGACATAGGGCTTCTGGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532872 lncRNA upstream 27452 6507902 ~ 6523525 (+) True G468822
TU532619 lncRNA upstream 46499 6501918 ~ 6504478 (+) True G468639
TU532868 lncRNA upstream 55293 6494938 ~ 6495684 (+) True G468820
TU532789 lncRNA upstream 62559 6486140 ~ 6488418 (+) True G468765
TU532847 lncRNA upstream 119188 6430148 ~ 6431789 (+) True G468802
TU532901 lncRNA downstream 1184 6555708 ~ 6557058 (+) True G468841
TU532930 lncRNA downstream 38500 6593024 ~ 6593649 (+) True G468855
TU532959 lncRNA downstream 94160 6648684 ~ 6649239 (+) True G468875
TU532965 lncRNA downstream 103885 6658409 ~ 6708164 (+) True G468878
TU532972 lncRNA downstream 110577 6665101 ~ 6665789 (+) True G468883
XM_036979284.1 mRNA upstream 62371 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 122838 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 319577 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 377566 6166943 ~ 6173411 (+) False LOC118964813
XM_036979258.1 mRNA upstream 402978 6133745 ~ 6147999 (+) True LOC110510489
XM_021605151.2 mRNA downstream 54397 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 128383 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 156370 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 165356 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 196457 6750981 ~ 6771402 (+) True LOC110525076
TU532790 other upstream 62559 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 171708 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 207362 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 306476 6210199 ~ 6244501 (+) True G468755
TU532623 other upstream 351822 6194772 ~ 6199155 (+) True G468643
TU532978 other downstream 117984 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 117984 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 117984 6672508 ~ 6674387 (+) False G468887
TU532983 other downstream 117984 6672508 ~ 6674387 (+) False G468887
TU532984 other downstream 117984 6672508 ~ 6674387 (+) False G468887

Expression Profile