RNA id: TU532907


Basic Information

Item Value
RNA id TU532907
length 2075
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G468841
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6550977 ~ 6557058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggctGGACTGAAAACCTAGatgacagtagatctccaggaagagggttggactgaaaacctacaggacagtagatatccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaactgaaaacctacaggacagtagatctccaggaagagggttaaaCTGAAAACCTAGATGACAGTAGATcttcaggaagagggttgggcagctcTGCATTACGTCTCCTGACGAATCCAGAAGGACCTTATTGAAGCACACTGGATTCTGACCATTGGCAGAACCATAGTAGAAACTATTAGTCTGTGCTAAGACTTGTTTTGTTATGAACAGAGCTTCTCCAGTCCAGTTGAATATCTGTTTCAGCACCAGTGTTGATTCAAAAGGCTGACCACAACACGCAGTGACCGAGAAGTTTGGCACCGTCCCGTCATTACATAATAAATACTGCCTTTTAAATCCAGTCCAATTCCTGCCCACATGCACTGTGGGTAGCAGCAGCAGACTTCCTGTCTCACTGCCCCTGTGTGTTCTGGGAGTTGGAGGCCTGGGCTGGCACtccggggtgaagtttcccctaggtacagatctaggatcagcggtgatccccccctcccccctccccccaattctaaccttaaccattaataCAAAACTTACCCCAGATCAGTGCCTAGGGACAACTTTACCCTACTCCTGGGCTGGCCCCTCAGTAGCAACAGCGATGTTGCTCTGGTCCTGGAGCAGTAGCTGTGCAGGaggacatagaaacaccaccatGACAGTGATGTTATCACTAGAGCCCGCTGCCTTGGCGTGAGCTACTAGCTCCTGGGCCACTCGCTCCCCTAGTACACCCTCTGAGATCTCTTCACACCCGGCCCCCTCCACGGCCCCCTGGGGTTCCCCCTGCTCCCGTAGCGCCCCGAGAACCAGAGCCGGGACCTCTGCGGGCCGGACGACGTCAAAGAAACCGTCGCAGGCCAGGAGGATGTAGTCCTCGTCTCCGTGTAGCCGTGTGGAGGAACAGTCAGCGTCGCCAGAGACATAGGGCTTCTGGTCAAAGTCCCCTGGGAAAGAGgtgttgtgtcagtgtgtagaggcaGCGGTTCACAAGTAAAGTAAAGGAGACTGGTTATTAGATGTGTTGAGTATTATTGGATGTGCACCGTCCTGGCTTGCATATCAGTCTGTGCTCATCAGTTCAGTATAAATATGAACATACAGTTACAGGCATCAAAATAAAGACGGAGGATTGCAAAGATGCCATTTCAAGACAGGGGTGAAAGGAAGCCATTTCAGGACAGAGGTGAAAGGAAGCCATTTCAGGACAGAGGTGAAAGGAAGCCATTTCAGGACAGAGGCTACCAAGGTAACAGTGGAGGCATGTTGAAGAAGAAGAGCAGAGTTGTTGTCTATTCCTGGGGCGTTGTTTCAACCACCACAAGGTTGGGTTCCACTCACCTATGGCCCGAGAGACGGCGTAGGTTCCATTGACACGCCAACAGCCCATGAAGACGATGCATCCACCCAGGCCTTCTACACGCTGCTTCTCATCCTATAGgaagacagcagtggagagatgtTTAGCACTGTGtatgtcccatagggcggtgcacaactggcccagcgtcgtctgggatAAGGGAGGCCggcattgtaaatatgaatttgttcttaactgacttgcctagttaaataaaggttaaaataatcAATAAAGTGTGTGTGACCTCTCTGTCAGGCTTGTGTGGGTCCATCAGAGTGATGTCTTGTCCTCGTCGGACCAGCATGCTCTGGGAGTCTCCCAGCCACGCCACATGAAGCCACTCCCCTTGCAGCAGCACCGCCACACCTGTACTGCCGCTGCGAAGACGCTGcagacacaacacagacagacacacccccgtcacacagacagacacacccccgtcacacagacagacacacccccgtcacacagacagacacacctccgtcacacagacacacccccgtcacacagacagacaaccccgtcacacagacagacacacccccgtcacacagagacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532894 lncRNA upstream 349 6550977 ~ 6553095 (+) False G468841
TU532898 lncRNA upstream 349 6550977 ~ 6553095 (+) False G468841
TU532903 lncRNA upstream 349 6550977 ~ 6553095 (+) False G468841
TU532904 lncRNA upstream 422 6550977 ~ 6553022 (+) False G468841
TU532872 lncRNA upstream 29919 6507902 ~ 6523525 (+) True G468822
TU532930 lncRNA downstream 36993 6593024 ~ 6593649 (+) True G468855
TU532959 lncRNA downstream 92653 6648684 ~ 6649239 (+) True G468875
TU532965 lncRNA downstream 102378 6658409 ~ 6708164 (+) True G468878
TU532972 lncRNA downstream 109070 6665101 ~ 6665789 (+) True G468883
TU532975 lncRNA downstream 113419 6669450 ~ 6738008 (+) True G468885
XM_036979284.1 mRNA upstream 64838 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 125305 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 322044 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 380033 6166943 ~ 6173411 (+) False LOC118964813
XM_036979258.1 mRNA upstream 405445 6133745 ~ 6147999 (+) True LOC110510489
XM_021605151.2 mRNA downstream 52890 6608921 ~ 6609844 (+) True LOC110525188
XM_021605152.2 mRNA downstream 126876 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 154863 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 163849 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 194950 6750981 ~ 6771402 (+) True LOC110525076
TU532896 other upstream 349 6550977 ~ 6553095 (+) False G468841
TU532790 other upstream 65026 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 174175 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 209829 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 308943 6210199 ~ 6244501 (+) True G468755
TU532978 other downstream 116477 6672508 ~ 6674387 (+) False G468887
TU532980 other downstream 116477 6672508 ~ 6674387 (+) False G468887
TU532982 other downstream 116477 6672508 ~ 6674387 (+) False G468887
TU532983 other downstream 116477 6672508 ~ 6674387 (+) False G468887
TU532984 other downstream 116477 6672508 ~ 6674387 (+) False G468887

Expression Profile