RNA id: TU532975


Basic Information

Item Value
RNA id TU532975
length 503
lncRNA type read_through
GC content 0.40
exon number 2
gene id G468885
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6669450 ~ 6738008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctaatacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcggcacacgtgacaaataaactttgatttgatttgacatagatTGCAGTATAGagtagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccgcattcttatcggcagactaaacagccttgatttctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532972 lncRNA upstream 3661 6665101 ~ 6665789 (+) True G468883
TU532959 lncRNA upstream 20211 6648684 ~ 6649239 (+) True G468875
TU532930 lncRNA upstream 75801 6593024 ~ 6593649 (+) True G468855
TU532901 lncRNA upstream 112392 6555708 ~ 6557058 (+) True G468841
TU532907 lncRNA upstream 113419 6553444 ~ 6556031 (+) False G468841
TU533038 lncRNA downstream 34542 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA downstream 34542 6772550 ~ 6772965 (+) True G468929
TU533042 lncRNA downstream 37026 6775034 ~ 6781668 (+) True G468930
TU533015 lncRNA downstream 56407 6794415 ~ 6795906 (+) True G468907
TU533054 lncRNA downstream 62172 6800180 ~ 6800514 (+) False G468938
XM_021605151.2 mRNA upstream 59606 6608921 ~ 6609844 (+) True LOC110525188
XM_036979284.1 mRNA upstream 180844 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 241311 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 438050 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 496039 6166943 ~ 6173411 (+) False LOC118964813
XM_036979295.1 mRNA downstream 12973 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA downstream 13720 6751728 ~ 6751803 (+) True trnae-uuc
XM_036979158.1 mRNA downstream 150841 6888849 ~ 6895793 (+) False LOC118964793
XM_036979300.1 mRNA downstream 169600 6907608 ~ 6909956 (+) False LOC110525195
XM_036979302.1 mRNA downstream 170349 6908357 ~ 6909956 (+) False LOC110525195
TU532896 other upstream 116355 6550977 ~ 6553095 (+) False G468841
TU532790 other upstream 181032 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 290181 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 325835 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 424949 6210199 ~ 6244501 (+) True G468755
TU533217 other downstream 614178 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 870309 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1475272 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 2071965 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2485343 9223351 ~ 9225513 (+) True G470770

Expression Profile