RNA id: TU532980


Basic Information

Item Value
RNA id TU532980
length 1672
RNA type TUCP
GC content 0.49
exon number 2
gene id G468887
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6672508 ~ 6674387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAAACACaatgtttttattcatttgttATTCATCGTCGAAAGAGCAACTAGCCCAAACGAAGGTGTTTCATGATAACATATGGAGTTGAGGCTCTATATTACAGACTAGAAAATATCCTCCCCGATGACCCACAATGAAAACGGCAGAAAACTAAAAAATAAACAGCCTTAAAAATGGTGTTCCAAATAACTTCAATCATATGGTCTTCCACTATACAAATAAACAATATCCTTTCCCGACATTCAAACATAAAATAAGTCTAAACACAATAAGAAAACACTCCCAAAAGCAAGTCAGGTGAGTCATGTTCCCGGGGGAAAGGCCTCACAGTAGGTGGTGTCTAAATGTGATGTCATTGTTACAGGTAAAGGGTGAGCACAGCAGCTACAGGTAAAGGGTGAGCACAGCAGCTAGAGGTAAAGGGTGAGCACAGCAGCTAGAGCTAAAGGGTGAGCACAGCAGCTACAGGTGTCAACCTTGGAAGTGAAAAATCCAGACAATGTTTGTTTTTATTGCCATCAGGATGTCGGTCGCTAAGGAGTAGACAGGCACAGTAGATTCACCTGGAAATGGCAGTTTCCCatagattccccccccccctgcagGCAGGTGCTAATACCTCTGATATCAGAGCAGGACAACTGCCTCACCACATTCTCCCTCAAACTAACCAAAGCCAAATTCTTCAATCCCATTTTGTTCAGAGATGTGTCAAATTCAAAAACGTCAACCGATTCTCATCGTCAGACAACCTTCTCATCTCCCTGTCTGCTCCCGGCACCAGAGACCGACTGCACAGAGCCGGACGCTCCTAACGTAAGCCTATATTCAGTAGTCAATAGTCATCAAAAGTTGTTCCCGGTTGGCTAACGGGTATACGAAAGAATGTCATAACAAAGTCATAGGCGCCATCTTGACCCAGGTAGCTGCTGCATCAGTGTCATCCTGCAGTCGACTTGCACCGTCTGACGTGGCTCCCTATTTTAGCGCACTATTTTTGTTGATCAGAGTCATGTGggtatgtatatattatagaatAGGGTTCCGTTTCAGAAGAAGCAGAGGCGCAATATTATGTGACGATGTCCGATGAGATCGTCGGCACTCATTGTGACGTCGTCAAGAGCTCgtcatgacgtcagagctcaccGTGACGCAGCAGCTTGACGATGTCACCAGAGCTCTTCGTGACGGCGTCTCGTTAGCTTGATGATGTCATCAGAGCTCTTCGTGACGGTGTCTCGTTAGCTTGATGATGTCATCAGAGCTCTCCGTGATGGCGTCTCGTTAGCTTGATGATGTCATCAGAGCTCTTCGTGACGGCGTCTCGTTAGCTTGATGATGTCATCAGAGCTCTCCGTGATGGTGTCTCGTTAGCTTGACGATGTCATCAGAGCTCTTCGTGATGGTGTCTCAGCGGTTCTTGGCTGGGGAGAATGAACACACCCTCCATAGCCTTCCAGTAGTTGTTCTGGTTGGCAGTGCTCATGCCGTGCACCTCCCTCTGCCCCTGGATGGGGTTGCCGTACTGCTCGCCCGTCACGCTCAGGAAGGCGTCGGTGCCGACGTGTTTGAAGCGCACCGCCTCGTCCCGCTCCCAGATGGAGCCGTCGCACTGCACTCGCCACACGTCCAGGTCATCCCCCTCGCCGTTCTCGCCGAACGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532972 lncRNA upstream 6719 6665101 ~ 6665789 (+) True G468883
TU532959 lncRNA upstream 23269 6648684 ~ 6649239 (+) True G468875
TU532930 lncRNA upstream 78859 6593024 ~ 6593649 (+) True G468855
TU532901 lncRNA upstream 115450 6555708 ~ 6557058 (+) True G468841
TU532907 lncRNA upstream 116477 6553444 ~ 6556031 (+) False G468841
TU532998 lncRNA downstream 22985 6697372 ~ 6702759 (+) True G468897
TU533028 lncRNA downstream 61310 6735697 ~ 6756156 (+) True G468920
TU533038 lncRNA downstream 98163 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA downstream 98163 6772550 ~ 6772965 (+) True G468929
TU533042 lncRNA downstream 100647 6775034 ~ 6781668 (+) True G468930
XM_021605151.2 mRNA upstream 62664 6608921 ~ 6609844 (+) True LOC110525188
XM_036979284.1 mRNA upstream 183902 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 244369 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 441108 6224254 ~ 6231400 (+) False LOC110510500
XM_036979262.1 mRNA upstream 499097 6166943 ~ 6173411 (+) False LOC118964813
XM_021605152.2 mRNA downstream 8520 6682907 ~ 6692547 (+) True ydjc
XM_036979293.1 mRNA downstream 36507 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 45493 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 76594 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA downstream 77341 6751728 ~ 6751803 (+) True trnae-uuc
TU532896 other upstream 119413 6550977 ~ 6553095 (+) False G468841
TU532790 other upstream 184090 6423414 ~ 6488418 (+) False G468765
TU532821 other upstream 293239 6377639 ~ 6379269 (+) True G468791
TU532794 other upstream 328893 6254476 ~ 6343615 (+) False G468768
TU532773 other upstream 428007 6210199 ~ 6244501 (+) True G468755
TU532999 other downstream 36301 6710688 ~ 6713037 (+) False ccl19a.2
TU533000 other downstream 36301 6710688 ~ 6713037 (+) False ccl19a.2
TU533001 other downstream 36301 6710688 ~ 6713037 (+) False ccl19a.2
TU533002 other downstream 36301 6710688 ~ 6713037 (+) False ccl19a.2
TU533003 other downstream 36301 6710688 ~ 6713037 (+) False ccl19a.2

Expression Profile