RNA id: TU532998


Basic Information

Item Value
RNA id TU532998
length 2288
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G468897
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6697372 ~ 6702759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAGCCATCTTTAttatgaaacattggaccaaatCACACAGCTGTTACACTGCTCCAGTCCCCTGTCCTGTTTTACACCCTACTGGCAGACAGACAATTAGAGAGACAGCCCTCtcccagctcaatataaacaatAAGAGACAGCCCTCTCCCAGCTCAATATAAAGGCGCCTGTTATAACAGTCTCTGTGCGTCTCTGTTCAAAACCAGTCTGTGTTTGAAATAGCATCTTATTCCATATATAGCGCACTACTgatgaccaggacacacagggtTATGGTTACAAGTAcagcactatgtaaggaatagggtgccattttcgCCCCAACCCGGTCTTTAGACTCCACCTGGCATTGCCCCGACAGACAGTTCACTAAGTCCCTTGTTACAGTGGATATATCGGCCACTGATTTGATATATTCATGTCAAGTCTCTCGCGATGACACGAGATTTGGTTTGCGGTGCTAAGATTATTtttatgtagagagagagagagagagagagagagagagagagagagaaaggagGTGGGGTTCTGATTTTGCGTGTGACCATGAGCAGACAGGAGAGCAGACttaaagccaatttatgcttgattcCGAAAAGATGGTCGGAGGCGCTGTATGGAGGGTGTGATGCAATTGTGGAGCCacgcagaggccaaattgagctccaCACCGCATTCACCGCGCGCCACCCAAATGTTGTAACAGTTCcttatagctccgcattgacctGATTGGTTGATATTAAGTGGGGGggtgggaggtcctgtataaacacaaactcacttccttgacaacagctctgcaaAGGAAGTATACATGCCCTGGCTTTAGAAGCTGTATCTCAGTAAATGTTGTGTGGCCACTGCAGAGCTTTTTACAGGAAACAAACTGTACGGTGTCACTACTATTTCTACCTCCCACTGTCTTGAGATGGCAAACTGGTATCTAAAATGTGTATAGGAGAAAAGTTAGAACCCAAGACACACAGCATGGTGGGAACGGTAGAACCAGTGGGTGGGGGTATACAACCACATTATAACACAAGAGGGAGATGTTTTAAGTCGGAATGGCACTTCTGCCTATAAAGCAAAAAAAACGAACCAGAAGGAAGAATAAGACCATCTAATGCAAAGAGGGGCATCTTTCAAAACATTTTGGACTGGTGAAGGGGAGTGTGAACGATGATCATCTCCGGTCAATTGCACTTGTAATTCATTACAATATTAGGGTATTATCAGTGGCCAttttgtgtctgtctgctcagTGGGCTGGCTTCAAGCCGAGGGGAAGGACAACTGAGAGAGGGCTTGTTCCACAGAATACAGTGCAACTTCAGAAGCAGAGAAGTCCAAGGGAAAACATTTCAGCACACACTTCCAGGGCCTAGCAAGCtatgagagagaggttgtttgtTTCAGTAAGACATGCCATTTAGGGTTGATAGAAAACAAGATGAGACTAGAGAACAGAACAAAGAAAGTAAAGGATAACCACAACTTTTCCTTCTGTCAGAAAGATCTCCTTCCAGAAGTGAGGAGAAAGGTCTACAATACTCAAGCAGTGATTTCTTGTTTTCCCCACCccaatttttttaaacattttttttttctccctctattTTGTTTTCCCTCCTTAGTTCTCCATATTTAACATGGACATTCTAACCACTTATTTTTTCTTGTCTTTTTCATTTTTCATATTTTAATTTAAGAAAATAGTATAAAGTTAGTAGCGGATCGATCGATCGATCGCCAGGAGGAGAAACCGGTCTGATCCAGAGTCCTGCGAAGATGGTGGGGCTGCAGCCACACGCGGAGGTGAGGCTAGGGCTGCTCCCGGGCTGctaggatgatgtgtgtgtgtgtgtggggagatggggaggagagagggggaaggtacagagaggagggaggagaacagagactttcagttggggagaggagagagagagagagggctacaaACTGGTCAGGTAATCAGTCCATTGGTCTCTTTTCTCCATGTTTCTTTGTAAACTCTTCTGCGTTCTTAAAGAATTTTTTCCGGTCCTTTGAGTATTCTTCTGCTAGGTCTGCCCTCAGGGGGTGCTCTGGCTGGGGGTCGTTCACCAACGCAATCAGGGagaggagagagagaaacatcatgATATGTTAAGGCCCCTCCAACGACTCTGTTGATGGTAATGTACAATCCTTCCAAGGATTGTGGCTGAGTAACCTTCCGAAATCCCTACATTGAGTCTGATGTCAATCAAGTAATaaatagagagatagataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU532972 lncRNA upstream 31583 6665101 ~ 6665789 (+) True G468883
TU532959 lncRNA upstream 48133 6648684 ~ 6649239 (+) True G468875
TU532930 lncRNA upstream 103723 6593024 ~ 6593649 (+) True G468855
TU532901 lncRNA upstream 140314 6555708 ~ 6557058 (+) True G468841
TU532907 lncRNA upstream 141341 6553444 ~ 6556031 (+) False G468841
TU533028 lncRNA downstream 32938 6735697 ~ 6756156 (+) True G468920
TU533038 lncRNA downstream 69791 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA downstream 69791 6772550 ~ 6772965 (+) True G468929
TU533042 lncRNA downstream 72275 6775034 ~ 6781668 (+) True G468930
TU533015 lncRNA downstream 91656 6794415 ~ 6795906 (+) True G468907
XM_021605152.2 mRNA upstream 4825 6682907 ~ 6692547 (+) True ydjc
XM_021605151.2 mRNA upstream 87528 6608921 ~ 6609844 (+) True LOC110525188
XM_036979284.1 mRNA upstream 208766 6482012 ~ 6488606 (+) True LOC118964815
XM_036979285.1 mRNA upstream 269233 6423141 ~ 6428139 (+) True LOC110518225
XM_036979286.1 mRNA upstream 465972 6224254 ~ 6231400 (+) False LOC110510500
XM_036979293.1 mRNA downstream 8135 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605155.2 mRNA downstream 17121 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979295.1 mRNA downstream 48222 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA downstream 48969 6751728 ~ 6751803 (+) True trnae-uuc
XM_036979158.1 mRNA downstream 186090 6888849 ~ 6895793 (+) False LOC118964793
TU532978 other upstream 22985 6672508 ~ 6674387 (+) False G468887
TU532980 other upstream 22985 6672508 ~ 6674387 (+) False G468887
TU532982 other upstream 22985 6672508 ~ 6674387 (+) False G468887
TU532983 other upstream 22985 6672508 ~ 6674387 (+) False G468887
TU532984 other upstream 22985 6672508 ~ 6674387 (+) False G468887
TU532999 other downstream 7929 6710688 ~ 6713037 (+) False ccl19a.2
TU533000 other downstream 7929 6710688 ~ 6713037 (+) False ccl19a.2
TU533001 other downstream 7929 6710688 ~ 6713037 (+) False ccl19a.2
TU533002 other downstream 7929 6710688 ~ 6713037 (+) False ccl19a.2
TU533003 other downstream 7929 6710688 ~ 6713037 (+) False ccl19a.2

Expression Profile