RNA id: TU533015


Basic Information

Item Value
RNA id TU533015
length 1492
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G468907
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6794415 ~ 6795906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggcctagggacagtgggttaactgcctgttcaggggcagaacgacagatttttaccatgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccattagactAGTGATGAGATGTGCCTGGTTTTCTTTGAATTCAGGACAAACAGTTACATTTGTGTCTTATCAGACTACAGAATATTTTGTCTGGGTAGTTTCATATTTAACATTTctcaatgatggagaccactttGCTTATGGAAACGTTCAACCCTCTGGAAATTGTTTTATACTCTTCTCCAGATATATATCTCAGAGATCAACAGACAGTTCCTTGGACGTttgtctttctaaatcatgtccaaacaattgaattggacacaggtggactccagtcatgTTGTAGTGACATCTAAAGGAAGGTAAAAGGAAATtcaatgcacctgagctcaatttggagagTCGTGGTAAAGGGgtgtgagatatttctgtatttcattattTTCATAGATTTCTACAAATatgtttttcgctttgtcattatggggtattgtgatgtcattatgggttattgtgatgtcattatgggttattgtgatgtcattatgggttattgtgatgtcattatggggtattgtgatgtcattatgggttattgtgatgtcattatggggtattgagtgtgagaaaaaaatatatttaatccattttgaattcagtctgtaacacaacaaaatgtggaataagtcaaggggtatgaatactttctgaaggcactgtatgtgccaaAACCACAATAACAAATACATTGTTATAATCACAATACTCTTGGCAGGCATTTATCCCCATAGCTGTCCATTCACcatgcccataacatgatacTAACTCCCATTTACAAATGTTTGTTATTAATGCAATAAtgtatacactgactgtacaaaacattaggaacacctgctctttccatgacatagacttgaccaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcaaatcagtgtaaatgaagggtaGGAAACAGGTTTAAGAAtgctttttaagccttgagaccatTCAAACATTGatagtgtatgtgtgccattcagagggtgaatgggcaagacaaaagatttaagcgcctttaaacagggtatggtagtaggtgccaggccgcaccgatttgagtgtgtcaagaactgtaacgttgctgggtttttcacgctcaacagtttcccgtgtgtatcaagaatgatccaccatccaaaggacatccagacaacatgacacaactgtgggaatcattggagtcaacatgggccagcatcactgtggaacactttcagctccttgtcgagtccatgccccgacaaatggAGGCTATCCTGAggtcaaaagggggtgcaactcaataccaGGAATgtgttccaaatgttttgtaCATAACCATACCTCATATCTATTtctatctttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU533042 lncRNA upstream 12747 6775034 ~ 6781668 (+) True G468930
TU533038 lncRNA upstream 21450 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA upstream 21450 6772550 ~ 6772965 (+) True G468929
TU533028 lncRNA upstream 38259 6735697 ~ 6756156 (+) True G468920
TU532975 lncRNA upstream 56407 6669450 ~ 6738008 (+) True G468885
TU533054 lncRNA downstream 4274 6800180 ~ 6800514 (+) False G468938
TU533053 lncRNA downstream 4318 6800224 ~ 6800514 (+) True G468938
TU533055 lncRNA downstream 4941 6800847 ~ 6801926 (+) True G468939
TU533057 lncRNA downstream 6758 6802664 ~ 6802941 (+) True G468940
TU533062 lncRNA downstream 13920 6809826 ~ 6810286 (+) True G468945
XM_036979295.1 mRNA upstream 23013 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA upstream 42612 6751728 ~ 6751803 (+) True trnae-uuc
XM_021605155.2 mRNA upstream 52922 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979293.1 mRNA upstream 81324 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605152.2 mRNA upstream 101868 6682907 ~ 6692547 (+) True ydjc
XM_036979158.1 mRNA downstream 92943 6888849 ~ 6895793 (+) False LOC118964793
XM_036979300.1 mRNA downstream 111702 6907608 ~ 6909956 (+) False LOC110525195
XM_036979302.1 mRNA downstream 112451 6908357 ~ 6909956 (+) False LOC110525195
XM_036979299.1 mRNA downstream 115914 6911820 ~ 6914445 (+) True LOC118964818
XM_036979303.1 mRNA downstream 137708 6933614 ~ 6935571 (+) True LOC118964819
TU533014 other upstream 52922 6719925 ~ 6741493 (+) True ccl19a.1
TU533002 other upstream 81378 6710688 ~ 6713037 (+) False ccl19a.2
TU533217 other downstream 556280 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 812411 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1417374 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 2014067 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2427445 9223351 ~ 9225513 (+) True G470770

Expression Profile