RNA id: TU533053


Basic Information

Item Value
RNA id TU533053
length 291
lncRNA type antisense_over
GC content 0.62
exon number 1
gene id G468938
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6800180 ~ 6800514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCGCCCCTTCTCTCATAGACTCTGCTCTCCGTGACTCCGAGCTCCACCCCCTCATGAGCTGGAAGGTGGAGCATGCGGATTGGTCCAGGCCCTGGCCAGCGGAGGCGGAGCAGAGCTGTTCCTTGCTTCTCAGGTGTTCCTGGTTCCTCTGGACCAATCGCGGCTCAAAGAGCAGATCCAGATCAAAGGGCAACAGAGACagaggctggaggaggaggaggagctccTCCAAGAGAGGCTGGCACGGCCCCTGAGACAACGGCAGGAAACCCCACGGGTGGTAGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU533015 lncRNA upstream 4318 6794415 ~ 6795906 (+) True G468907
TU533042 lncRNA upstream 18556 6775034 ~ 6781668 (+) True G468930
TU533038 lncRNA upstream 27259 6772550 ~ 6772965 (+) False G468929
TU533040 lncRNA upstream 27259 6772550 ~ 6772965 (+) True G468929
TU533028 lncRNA upstream 44068 6735697 ~ 6756156 (+) True G468920
TU533055 lncRNA downstream 333 6800847 ~ 6801926 (+) True G468939
TU533057 lncRNA downstream 2150 6802664 ~ 6802941 (+) True G468940
TU533062 lncRNA downstream 9312 6809826 ~ 6810286 (+) True G468945
TU533066 lncRNA downstream 12884 6813398 ~ 6814115 (+) True G468948
TU533067 lncRNA downstream 14849 6815363 ~ 6815940 (+) True G468949
XM_036979295.1 mRNA upstream 28822 6750981 ~ 6771402 (+) True LOC110525076
trnae-uuc mRNA upstream 48421 6751728 ~ 6751803 (+) True trnae-uuc
XM_021605155.2 mRNA upstream 58731 6719880 ~ 6741493 (+) False ccl19a.1
XM_036979293.1 mRNA upstream 87133 6710894 ~ 6713091 (+) False ccl19a.2
XM_021605152.2 mRNA upstream 107677 6682907 ~ 6692547 (+) True ydjc
XM_036979158.1 mRNA downstream 88335 6888849 ~ 6895793 (+) False LOC118964793
XM_036979300.1 mRNA downstream 107094 6907608 ~ 6909956 (+) False LOC110525195
XM_036979302.1 mRNA downstream 107843 6908357 ~ 6909956 (+) False LOC110525195
XM_036979299.1 mRNA downstream 111306 6911820 ~ 6914445 (+) True LOC118964818
XM_036979303.1 mRNA downstream 133100 6933614 ~ 6935571 (+) True LOC118964819
TU533014 other upstream 58731 6719925 ~ 6741493 (+) True ccl19a.1
TU533002 other upstream 87187 6710688 ~ 6713037 (+) False ccl19a.2
TU533217 other downstream 551672 7352186 ~ 7352578 (+) True G469048
TU533868 other downstream 807803 7608317 ~ 7643790 (+) True LOC110525210
TU534692 other downstream 1412766 8213280 ~ 8217274 (+) False G470292
TU535014 other downstream 2009459 8809973 ~ 8810943 (+) True G470599
TU535229 other downstream 2422837 9223351 ~ 9225513 (+) True G470770

Expression Profile