RNA id: TU537553


Basic Information

Item Value
RNA id TU537553
length 2253
lncRNA type intronic
GC content 0.40
exon number 3
gene id G472811
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10824581 ~ 10829685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcaggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggaaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcggggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgagggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgcgggggtactggttagtacatgtaggtaggggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtaagggtaaagtgactatgcatagataataaacagtgagtagcagtaacaataacaagtcaatgtgggggggtactggttagtacatgtaggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537541 lncRNA upstream 18239 10806024 ~ 10806342 (+) True G472800
TU537460 lncRNA upstream 165020 10657951 ~ 10659561 (+) True G472725
TU537456 lncRNA upstream 165784 10654937 ~ 10658797 (+) True G472724
TU537402 lncRNA upstream 237342 10585311 ~ 10587239 (+) False G472675
TU537401 lncRNA upstream 237342 10585323 ~ 10587239 (+) True G472675
TU537771 lncRNA downstream 343492 11173177 ~ 11173692 (+) True G473018
TU537800 lncRNA downstream 392508 11222193 ~ 11223024 (+) True G473046
TU537802 lncRNA downstream 399804 11229489 ~ 11285481 (+) True G473047
TU537831 lncRNA downstream 468402 11298087 ~ 11298317 (+) True G473073
TU537835 lncRNA downstream 472988 11302673 ~ 11302944 (+) True G473076
XM_036979388.1 mRNA upstream 315452 10498718 ~ 10509129 (+) True LOC110525250
XM_021605225.2 mRNA upstream 315532 10497758 ~ 10509049 (+) False LOC110525250
XM_021605223.2 mRNA upstream 315532 10497769 ~ 10509049 (+) False LOC110525250
XM_036979381.1 mRNA upstream 340246 10480130 ~ 10484335 (+) False prf1.5
XM_021605243.2 mRNA downstream 708592 11538277 ~ 11561607 (+) True LOC110525261
NM_001160539.1 mRNA downstream 732782 11562467 ~ 11604688 (+) True commd10
LOC118965115 mRNA downstream 914984 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 916328 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 916333 11746018 ~ 11809089 (+) False LOC110525262
TU537053 other upstream 543458 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 1550628 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 1599068 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 2013638 8809973 ~ 8810943 (+) True G470599
TU534692 other upstream 2607307 8213280 ~ 8217274 (+) False G470292
TU537828 other downstream 448653 11278338 ~ 11279265 (+) True G473070
TU539228 other downstream 1358603 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 1674075 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 1882621 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 2483994 13313679 ~ 13313969 (+) True G475692

Expression Profile