RNA id: TU537839


Basic Information

Item Value
RNA id TU537839
length 259
lncRNA type intronic
GC content 0.39
exon number 1
gene id G473080
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11306804 ~ 11307062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaatgagaatgtgtcctCAAATCAACTGACCTGGTGAAATAAGGgttaaaaaagaaaagaaatgGGAGACTCCAATTCCATGTCGGATAAAAGAGAACGCAACACAACCTTCCAACATGTTGAATCTGGTGCAAAACAAAATAGCAGTAAAATTAGCAGTATTTTTCTGTGTTGTAATTCTTCATGTACATCCAGTCTACCCTATGtatttattctactctcactggCCCcatccctgcacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537838 lncRNA upstream 146 11306426 ~ 11306658 (+) True G473079
TU537836 lncRNA upstream 2710 11303889 ~ 11304094 (+) True G473077
TU537835 lncRNA upstream 3860 11302673 ~ 11302944 (+) True G473076
TU537831 lncRNA upstream 8487 11298087 ~ 11298317 (+) True G473073
TU537802 lncRNA upstream 21323 11229489 ~ 11285481 (+) True G473047
TU537847 lncRNA downstream 8341 11315403 ~ 11315701 (+) True G473088
TU537874 lncRNA downstream 58006 11365068 ~ 11366160 (+) True G473114
TU537876 lncRNA downstream 59436 11366498 ~ 11367157 (+) True G473115
TU537884 lncRNA downstream 66132 11373194 ~ 11421657 (+) True G473123
TU537917 lncRNA downstream 102855 11409917 ~ 11416361 (+) True G473150
XM_036979388.1 mRNA upstream 797675 10498718 ~ 10509129 (+) True LOC110525250
XM_021605225.2 mRNA upstream 797755 10497758 ~ 10509049 (+) False LOC110525250
XM_021605223.2 mRNA upstream 797755 10497769 ~ 10509049 (+) False LOC110525250
XM_036979381.1 mRNA upstream 822469 10480130 ~ 10484335 (+) False prf1.5
XM_021605243.2 mRNA downstream 231215 11538277 ~ 11561607 (+) True LOC110525261
NM_001160539.1 mRNA downstream 255405 11562467 ~ 11604688 (+) True commd10
LOC118965115 mRNA downstream 437607 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 438951 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 438956 11746018 ~ 11809089 (+) False LOC110525262
TU537828 other upstream 27539 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1025681 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2032851 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2081291 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 2495861 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 881226 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 1196698 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 1405244 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 2006617 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2677778 13984840 ~ 13985259 (+) True G476234

Expression Profile