RNA id: TU537962


Basic Information

Item Value
RNA id TU537962
length 202
lncRNA type intronic
GC content 0.42
exon number 1
gene id G473176
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11459890 ~ 11460091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTGTTGCAGTTGTGCGTCCTCATGTACAATGCTGAGCTGCTAATGTTTTTGCAATGTACTGTCCGCCTACTCGTTTTCTTTGTTGGATTACCTGCCATTTAGGGGCCTACCTTCCCACTGCCCTCATCTGACAGATAATACAACAAAAAACACTAGTAAATACTAGtcatgtccgcaaaaacactacagtgaatactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537961 lncRNA upstream 614 11459051 ~ 11459276 (+) True G473175
TU537959 lncRNA upstream 2167 11457492 ~ 11457723 (+) True G473173
TU537950 lncRNA upstream 13266 11445117 ~ 11446624 (+) True G473167
TU537939 lncRNA upstream 19368 11430163 ~ 11440522 (+) True G473158
TU537929 lncRNA upstream 30587 11426291 ~ 11429303 (+) True G473155
TU537963 lncRNA downstream 554 11460645 ~ 11460941 (+) True G473177
TU538534 lncRNA downstream 10651 11470742 ~ 11475365 (+) True G473702
TU538541 lncRNA downstream 18235 11478326 ~ 11478543 (+) True G473709
TU538571 lncRNA downstream 50606 11510697 ~ 11511037 (+) True G473739
TU538576 lncRNA downstream 58953 11519044 ~ 11519275 (+) True G473744
XM_036979388.1 mRNA upstream 950761 10498718 ~ 10509129 (+) True LOC110525250
XM_021605225.2 mRNA upstream 950841 10497758 ~ 10509049 (+) False LOC110525250
XM_021605223.2 mRNA upstream 950841 10497769 ~ 10509049 (+) False LOC110525250
XM_036979381.1 mRNA upstream 975555 10480130 ~ 10484335 (+) False prf1.5
XM_021605243.2 mRNA downstream 78186 11538277 ~ 11561607 (+) True LOC110525261
NM_001160539.1 mRNA downstream 102376 11562467 ~ 11604688 (+) True commd10
LOC118965115 mRNA downstream 284578 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 285922 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 285927 11746018 ~ 11809089 (+) False LOC110525262
TU537828 other upstream 180625 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1178767 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2185937 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2234377 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 2648947 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 728197 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 1043669 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 1252215 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1853588 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2524749 13984840 ~ 13985259 (+) True G476234

Expression Profile