RNA id: TU538639


Basic Information

Item Value
RNA id TU538639
length 278
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G473799
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11614634 ~ 11614911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttttactccatacattttccctgacacccaaagtaCTCTTTATATTTTGAATGTTTAccaggacagaaaatggtcaaattcacacttatcaagagaacatccctggtcatcccgactgcgtctgatctggcagactcagtAAGCACATGCTTCATATGTGAATGATGTCTGAGAGTTGGAGCattgcccctggctatctgtaaataaatgaAAACTAGAACATGTGGCCGTCTGCTTTgcctaatataaggaatttgaaattatttatacctgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538636 lncRNA upstream 1245 11613092 ~ 11613389 (+) True G473796
TU538630 lncRNA upstream 6400 11607869 ~ 11608234 (+) True G473791
TU538629 lncRNA upstream 6819 11607571 ~ 11607815 (+) True G473790
TU538628 lncRNA upstream 7505 11606917 ~ 11607129 (+) True G473789
TU538624 lncRNA upstream 12596 11601652 ~ 11602038 (+) True G473785
TU538642 lncRNA downstream 2601 11617512 ~ 11618242 (+) True G473801
TU538647 lncRNA downstream 8205 11623116 ~ 11623353 (+) True G473806
TU538660 lncRNA downstream 30980 11645891 ~ 11646146 (+) True G473819
TU538702 lncRNA downstream 79149 11694060 ~ 11694323 (+) True G473858
TU538910 lncRNA downstream 185003 11799914 ~ 11800392 (+) True G474038
NM_001160539.1 mRNA upstream 9946 11562467 ~ 11604688 (+) True commd10
XM_021605243.2 mRNA upstream 53027 11538277 ~ 11561607 (+) True LOC110525261
XM_036979388.1 mRNA upstream 1105505 10498718 ~ 10509129 (+) True LOC110525250
XM_021605225.2 mRNA upstream 1105585 10497758 ~ 10509049 (+) False LOC110525250
LOC118965115 mRNA downstream 129758 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 131102 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 131107 11746018 ~ 11809089 (+) False LOC110525262
XM_036979401.1 mRNA downstream 131108 11746019 ~ 11809089 (+) False LOC110525262
XM_036979403.1 mRNA downstream 131108 11746019 ~ 11809089 (+) False LOC110525262
TU537828 other upstream 335369 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1333511 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2340681 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2389121 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 2803691 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 573377 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 888849 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 1097395 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1698768 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2369929 13984840 ~ 13985259 (+) True G476234

Expression Profile