RNA id: TU538647


Basic Information

Item Value
RNA id TU538647
length 238
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G473806
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11623116 ~ 11623353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttgtcttaccagatgctgctgttctgtcctgccgatacggtgtataaccagccagctgtatgttgataatgtcattgttcagccacgactcggtgaaacataagatatttccgttggtagtttaatcttgctCGTAGGTCAtggattttattttccaatgattgcacgttggccaatagaacagatGGCAGTGGGGGTTTACTTGCTgacctacgaattctcagaaggcagcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538642 lncRNA upstream 4874 11617512 ~ 11618242 (+) True G473801
TU538639 lncRNA upstream 8205 11614634 ~ 11614911 (+) True G473799
TU538636 lncRNA upstream 9727 11613092 ~ 11613389 (+) True G473796
TU538630 lncRNA upstream 14882 11607869 ~ 11608234 (+) True G473791
TU538629 lncRNA upstream 15301 11607571 ~ 11607815 (+) True G473790
TU538660 lncRNA downstream 22538 11645891 ~ 11646146 (+) True G473819
TU538702 lncRNA downstream 70707 11694060 ~ 11694323 (+) True G473858
TU538910 lncRNA downstream 176561 11799914 ~ 11800392 (+) True G474038
TU539022 lncRNA downstream 218421 11841774 ~ 11842085 (+) True G474142
TU539023 lncRNA downstream 219556 11842909 ~ 11843237 (+) True G474143
NM_001160539.1 mRNA upstream 18428 11562467 ~ 11604688 (+) True commd10
XM_021605243.2 mRNA upstream 61509 11538277 ~ 11561607 (+) True LOC110525261
XM_036979388.1 mRNA upstream 1113987 10498718 ~ 10509129 (+) True LOC110525250
XM_021605225.2 mRNA upstream 1114067 10497758 ~ 10509049 (+) False LOC110525250
LOC118965115 mRNA downstream 121316 11744669 ~ 11744803 (+) True LOC118965115
XM_036979409.1 mRNA downstream 122660 11746013 ~ 11789305 (+) False LOC110525262
XM_036979408.1 mRNA downstream 122665 11746018 ~ 11809089 (+) False LOC110525262
XM_036979401.1 mRNA downstream 122666 11746019 ~ 11809089 (+) False LOC110525262
XM_036979403.1 mRNA downstream 122666 11746019 ~ 11809089 (+) False LOC110525262
TU537828 other upstream 343851 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1341993 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2349163 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2397603 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 2812173 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 564935 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 880407 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 1088953 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1690326 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2361487 13984840 ~ 13985259 (+) True G476234

Expression Profile