RNA id: TU539022


Basic Information

Item Value
RNA id TU539022
length 312
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G474142
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11841774 ~ 11842085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcccagaagagtggatgctcttatggcagcaaaggggggaccaactccatattaatgcccatgactttggaatgagcGGTTCGATGATCAGGtatccacatacctttggtcatgtagtgaatATTAACAACCTTATTGTTTTACTGTCAATGGGTTAAAAGCAAAACAAGAGTCCAGAAACAACACCTTACACCCACGTTGTGTGACAGACTGCAGACTCTCACCGCCTCTTCCACCCCTATAATGCCATTGATTTATCGGATCGGGCGTGTCTGGCAGGCTTTGCATGCCATGTGCTCTAGTTTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538910 lncRNA upstream 41382 11799914 ~ 11800392 (+) True G474038
TU538702 lncRNA upstream 147451 11694060 ~ 11694323 (+) True G473858
TU538660 lncRNA upstream 195628 11645891 ~ 11646146 (+) True G473819
TU538647 lncRNA upstream 218421 11623116 ~ 11623353 (+) True G473806
TU538642 lncRNA upstream 223532 11617512 ~ 11618242 (+) True G473801
TU539023 lncRNA downstream 824 11842909 ~ 11843237 (+) True G474143
TU539066 lncRNA downstream 38505 11880590 ~ 11880841 (+) True G474185
TU539070 lncRNA downstream 42149 11884234 ~ 11884593 (+) True G474189
TU539074 lncRNA downstream 50079 11892164 ~ 11892377 (+) True G474193
TU539038 lncRNA downstream 107038 11949123 ~ 11949351 (+) True sh2b3
XM_021605247.2 mRNA upstream 3902 11824359 ~ 11837872 (+) False LOC110525265
XM_021605248.2 mRNA upstream 3902 11824359 ~ 11837872 (+) True LOC110525265
XM_036979408.1 mRNA upstream 32685 11746018 ~ 11809089 (+) False LOC110525262
XM_036979401.1 mRNA upstream 32685 11746019 ~ 11809089 (+) False LOC110525262
XM_036979403.1 mRNA upstream 32685 11746019 ~ 11809089 (+) False LOC110525262
XM_021605250.2 mRNA downstream 11811 11853896 ~ 11857562 (+) False pheta1
XM_021605251.2 mRNA downstream 11815 11853900 ~ 11857562 (+) False pheta1
XM_036979410.1 mRNA downstream 11982 11854067 ~ 11857562 (+) True pheta1
XM_036979411.1 mRNA downstream 46852 11888937 ~ 11950017 (+) False sh2b3
XM_036979412.1 mRNA downstream 46852 11888937 ~ 11950017 (+) False sh2b3
TU537828 other upstream 562509 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 1560651 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 2567821 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 2616261 9223351 ~ 9225513 (+) True G470770
TU535014 other upstream 3030831 8809973 ~ 8810943 (+) True G470599
TU539228 other downstream 346203 12188288 ~ 12190572 (+) True G474321
TU539852 other downstream 661675 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 870221 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 1471594 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 2142755 13984840 ~ 13985259 (+) True G476234

Expression Profile