RNA id: TU539848


Basic Information

Item Value
RNA id TU539848
length 219
lncRNA type intronic
GC content 0.52
exon number 1
gene id G474847
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12497786 ~ 12498004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatggttgtcctcctggaagttctcccatctccacagaggaactctggagctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggtccttctcccccgattgctcagtttggctggatggctggttctaggaagagtcttggtggttccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539841 lncRNA upstream 12084 12485356 ~ 12485702 (+) True G474840
TU539438 lncRNA upstream 59606 12437953 ~ 12438180 (+) True G474481
TU539435 lncRNA upstream 63910 12433475 ~ 12433876 (+) True G474478
TU539434 lncRNA upstream 64619 12432967 ~ 12433167 (+) True G474477
TU539430 lncRNA upstream 66974 12430337 ~ 12430812 (+) True G474475
TU539854 lncRNA downstream 6158 12504162 ~ 12577127 (+) True G474852
TU539860 lncRNA downstream 24415 12522419 ~ 12522878 (+) True G474858
TU539956 lncRNA downstream 208361 12706365 ~ 12776504 (+) True G474945
TU539959 lncRNA downstream 215772 12713776 ~ 12715008 (+) True G474948
TU539966 lncRNA downstream 223210 12721214 ~ 12722439 (+) True G474953
XM_036979165.1 mRNA upstream 198403 12298373 ~ 12299383 (+) True LOC118964798
XM_036979420.1 mRNA upstream 215161 12272561 ~ 12282625 (+) False LOC110525277
XR_005052022.1 mRNA upstream 215161 12272561 ~ 12282625 (+) False LOC110525277
XM_021605268.2 mRNA upstream 250489 12244381 ~ 12247297 (+) True LOC110525274
XM_021605263.2 mRNA upstream 487767 11988363 ~ 12010019 (+) False LOC110525268
XM_036979422.1 mRNA downstream 62312 12560316 ~ 12564798 (+) False LOC110525280
XM_021605280.2 mRNA downstream 62365 12560369 ~ 12564798 (+) True LOC110525280
XM_036979166.1 mRNA downstream 85967 12583971 ~ 12586483 (+) True LOC110525282
XM_021605291.2 mRNA downstream 217889 12715893 ~ 12717368 (+) False hspb11
XM_021605292.2 mRNA downstream 217889 12715893 ~ 12717368 (+) True hspb11
TU539228 other upstream 307214 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 1218521 11278338 ~ 11279265 (+) True G473070
TU537053 other upstream 2216663 10280306 ~ 10281123 (+) True G472364
TU535218 other upstream 3223833 9268378 ~ 9273953 (+) False LOC110525088
TU535229 other upstream 3272273 9223351 ~ 9225513 (+) True G470770
TU539852 other downstream 5756 12503760 ~ 12504119 (+) True G474851
TU539960 other downstream 214302 12712306 ~ 12713298 (+) True G474949
TU540778 other downstream 815675 13313679 ~ 13313969 (+) True G475692
TU541379 other downstream 1486836 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 1499080 13997084 ~ 14015564 (+) True G476248

Expression Profile