RNA id: TU541346


Basic Information

Item Value
RNA id TU541346
length 2348
lncRNA type intronic
GC content 0.41
exon number 4
gene id G476201
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 13929928 ~ 13932437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataatctgtgTAACTTGAGAGAGTAAGAGGAGGGCATCTCtccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctcttctctccatatctcactctctttctctccatatctcactctttctctccatatctcactctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctctttctctccatatctcactctctttctctccatatctcactctctttctctccatatctcactccctctttctcaccatttctcactctctctttctctctatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatatCATTCTCTTTCTCACcatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctttcgctccatatctctctctctctttctcatctcaccatatctcactctctttctctccatatctcactccctctttctctccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctttctctccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctttctctctatatatcactctctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcaatctctttctctccatatctcactctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcaatctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactcaatatctcactctttctttctctccatatctcactccctctttctcaccatttctcactctctttctctctatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcactctctctttctcaccatatctcactctctctttctctccatatctcactctctttcactccatatctcactccctctttctcaccatatctcactctctttctctccatatctcactctctttctctccatatctctctctctttctcaccatatctcactctctttctctccatatcactccctctttctctccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctctttctcaccatatctcactctctttctctctatatatcactctctctttctctccatatctcactctctttctctccatatatcactctctctttctctccatatctcactctctttctctccatatctcactctctctttctctccatatctcaatctctttctctccatatctcactctctttctctccatatctcactctctttctcaccatatctcactctctttctctccatatctcaatctctttctctccatatctcactctctctttctctccatatctcactctctctttctctccatatctcactcaatatctcactctttctttctctcaatatctcactccctctttctcaccatatctcactctctctttctctccatatctcattctctttctcaccatatctctctctccatatctcactctttctttctctccatctctttctctatgAACGTCTAAAAAATGCAACAATACGAGACGCAAGAAGTGCTGGCGGGGAAGAAGAAAAGTAAAAGGAAGCTTCTTAAGCCAAGAATGTTGGTTAGGTTCCTGCTATTCCTCCGCTTGGCTGTGAGAAAAAAGATAACTGGTTTAGTGCTGAAATTCAGAGTAAAGTGTTCTCCTAAAGATCTTTCTATATGGCAAAGTGCTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU541335 lncRNA upstream 15397 13914168 ~ 13914531 (+) True G476190
TU541330 lncRNA upstream 28612 13901033 ~ 13901316 (+) True G476185
TU541326 lncRNA upstream 42199 13887200 ~ 13887729 (+) True G476181
TU541325 lncRNA upstream 45765 13883949 ~ 13884163 (+) True G476180
TU541323 lncRNA upstream 52958 13876734 ~ 13876970 (+) True G476178
TU541353 lncRNA downstream 12470 13944907 ~ 13945267 (+) True G476208
TU541362 lncRNA downstream 31120 13963557 ~ 13963771 (+) True G476217
TU541363 lncRNA downstream 31691 13964128 ~ 13964579 (+) True G476218
TU541364 lncRNA downstream 33987 13966424 ~ 13966710 (+) True G476219
TU541368 lncRNA downstream 39392 13971829 ~ 13972237 (+) True G476223
XM_021605307.2 mRNA upstream 196868 13726709 ~ 13733060 (+) True LOC110525299
XM_021605308.2 mRNA upstream 197302 13726709 ~ 13732626 (+) False LOC110525299
XR_005052402.1 mRNA upstream 605133 13322042 ~ 13324795 (+) True LOC118965067
XM_021605302.2 mRNA upstream 975869 12940770 ~ 12954059 (+) True aqp3a
XM_036979430.1 mRNA upstream 1003980 12896951 ~ 12925948 (+) True nol6
XM_021605312.2 mRNA downstream 709295 14641732 ~ 14644594 (+) True gig2p
XM_021605316.2 mRNA downstream 759127 14691564 ~ 14706855 (+) False LOC110525306
XM_021605318.2 mRNA downstream 759989 14692426 ~ 14706855 (+) True LOC110525306
XM_021605049.2 mRNA downstream 774440 14706877 ~ 14718733 (+) False LOC110525102
XM_036979438.1 mRNA downstream 783881 14716318 ~ 14718733 (+) True LOC110525102
TU540778 other upstream 615959 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 1216630 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 1425809 12503760 ~ 12504119 (+) True G474851
TU539228 other upstream 1739356 12188288 ~ 12190572 (+) True G474321
TU537828 other upstream 2650663 11278338 ~ 11279265 (+) True G473070
TU541379 other downstream 52403 13984840 ~ 13985259 (+) True G476234
TU541393 other downstream 64647 13997084 ~ 14015564 (+) True G476248
TU544659 other downstream 2426979 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 3046745 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 3168549 17100986 ~ 17107427 (+) True dab2ipa

Expression Profile