RNA id: TU542164


Basic Information

Item Value
RNA id TU542164
length 2627
lncRNA type intronic
GC content 0.48
exon number 5
gene id G476943
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14570132 ~ 14588260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGACCCAGGGTTCAGGAACACTCTTTAACACCTCCCAGTCACTGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTCCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTTATGAAACACTTTCTGGGGACCTACTCCAACTCACAGCAGCGTTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTCCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACACTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTCCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACACTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACACTTTCTGGGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCATTATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACCTACTCCAACTCACAGCAGCGTAATGAAACCCTTTCAGAGGACTTACTCCAACTCACAGCAGTGTAATGAAACCCTTTCAGAGGACCCACACAATAGAAGACAAGTGTCAAGTTGCTGCAGGTGTGACGACTCTCCAATCTCCCAAACAGCAGAAGGGTCTCCCAAGTCTAGCCAGGCGTACAATTGGGAAAAAGACTAGGCCTACACTCTGGTTGACTGGCGCAGGTGGCACAGCTGGCAAAAGGCACCACCACTATCTCTTCTCTGCCCACCCATCTGGAGCAGGTCTCTGAGAAAAGTTAGCATTGGGATTTGAAGAATTGGATTTCAGTACATTTTCACCTGCAGGTTCTGACAGCCTCTCATCCAGCTGTATCCAACACAGCACAGCAAAGTTGGCCTACAGTGGACCAGACCATTACCATACCAGAAGATATCTAACCCCGGGTGTAAAGTTGACCTGCCATGTGGGAGGAAGATGAGCCAATGTCCCTCAAATGTCCTTTGAGGTGACACTCACTCTCTCAGGAAGTGAAAATGGACTGTTTTTGTCTTTGGATTTCGGGCACTGACCAACATGTGACATTGCTATTTTATCAGACATAACTAAAATGCATTTTCACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU542077 lncRNA upstream 128765 14439451 ~ 14441367 (+) True G476861
TU542042 lncRNA upstream 193147 14376702 ~ 14376985 (+) True G476826
TU542041 lncRNA upstream 201534 14366402 ~ 14368598 (+) True G476825
TU542038 lncRNA upstream 206934 14362368 ~ 14363198 (+) True G476823
TU542037 lncRNA upstream 208000 14361850 ~ 14362132 (+) False G476823
TU542204 lncRNA downstream 47761 14636021 ~ 14636229 (+) True G476980
TU542233 lncRNA downstream 86688 14674948 ~ 14707249 (+) False G476995
TU542256 lncRNA downstream 88865 14677125 ~ 14680573 (+) True G477008
TU542238 lncRNA downstream 103645 14691905 ~ 14700233 (+) False G476995
TU542236 lncRNA downstream 104222 14692482 ~ 14700233 (+) True G476995
XM_021605307.2 mRNA upstream 837072 13726709 ~ 13733060 (+) True LOC110525299
XM_021605308.2 mRNA upstream 837506 13726709 ~ 13732626 (+) False LOC110525299
XR_005052402.1 mRNA upstream 1245337 13322042 ~ 13324795 (+) True LOC118965067
XM_021605302.2 mRNA upstream 1616073 12940770 ~ 12954059 (+) True aqp3a
XM_036979430.1 mRNA upstream 1644184 12896951 ~ 12925948 (+) True nol6
XM_021605312.2 mRNA downstream 53472 14641732 ~ 14644594 (+) True gig2p
XM_021605316.2 mRNA downstream 103304 14691564 ~ 14706855 (+) False LOC110525306
XM_021605318.2 mRNA downstream 104166 14692426 ~ 14706855 (+) True LOC110525306
XM_021605049.2 mRNA downstream 118617 14706877 ~ 14718733 (+) False LOC110525102
XM_036979438.1 mRNA downstream 128058 14716318 ~ 14718733 (+) True LOC110525102
TU541393 other upstream 554568 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 584873 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 1256163 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 1856834 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 2066013 12503760 ~ 12504119 (+) True G474851
TU544659 other downstream 1771156 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 2390922 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 2512726 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 2732514 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 2856493 17444753 ~ 17445931 (+) True G480219

Expression Profile