RNA id: TU544223


Basic Information

Item Value
RNA id TU544223
length 1335
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G478864
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16123256 ~ 16165797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtctctctctgtgtgtgtgtgtgtgaattgagagagagggggcagaagggagcagagagggagagagatatccAATGATAATCAGCAACGACGTTCTATAAAGGTGTTAGGCTACAATACAATGATATTTTGATGCCAATAACTAAACAAGATGTTTCCACGTTATAATAATTGAGGTTCCAAATGTAAGGTAAAACAATACAATGTGACGTTGTAGTCCTTCATCAGCGCTATTAATTTAGTGATATGTATTATTTACAATGGCTAATTCACTGCGCATAGTCTAGGCCCTATAGCCTACAATCTTTACACGTTCGCTAAAATGTTTAGCATTTCCATCTACGTCCATCTGCACCTGTTCACCTGTGTTGTTGCTGCTCACCTTATATTGTATTGGCCCTATAGAAACATGTCGTTCAGGTGCTCACCGTGTTATTGTATTCGCCCTATAGAAACATGTCGTTCAGGTGCTAACTGGAGAGACCAAATAGTTGGGAAGGCATCCATCCAGCTGCTCAGACAAAACACTTCTTAATCCTAAATTATATGAAACCCAGCCCTGTGCAATTATTACTCACATGGCACGCGGTTCAAATCTGACTGCACTTTAGTTGAATTAAAGTGTCCGTGGTTAGCTTTACATTAACGTTCCCTCAAAGTGACACCAGTTGATTCAACTGACATTTGAAGGCTAACAAAAGGACCCTCCAAGAATGCACCAAGCAAGCAGACTCGATCCAATCATGTAgaatattgtagaatatagttaGAATAATCGATTTGTAAATCAGGGTAGGTTCAGGGTAAACCTACATTTCCTAAATCTATTTCTCTTACAGTTTGGAACGTATGCTACACAGGCCTCAACCACGCATTCGTCTCATCAAACACCCCAACATACAATTTTAACAGTACCAAAGTAGGCTAATCAGGTAATTCAAGTTTCCCAATAGTTCTGACCTAATGTTATCATTCATACTATTTCTCAATTTGAACAGAAGTGTGTTTGTAAACATAAAAGTCAAGCTTTCCACCACCATAGCCTTATGGTGCgtcatacaacatacaacatttGTCATGAAACATAGACTAGCAACTGTGATCCTATACTGTAGGTTTGTGTCATTCTGTCACTTTAAAGAACAGTAATGCCTTGATTACAGTAATGCATTGATTACCGATAGTAAGTCGTTGTTATTTTCCCTCTGAAGAACATATGTCCGTATTAACCGGAACATTTGACAATGTATAACACTGTTTGACATGGTAATAGACGATCACTGTGATATTTTATGATTGTGATATGTAATTAAACTAATTCAAACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU544177 lncRNA upstream 66102 16056938 ~ 16057154 (+) True G478828
TU544174 lncRNA upstream 70692 16052363 ~ 16052564 (+) True G478825
TU544172 lncRNA upstream 72619 16050195 ~ 16050637 (+) True G478823
TU544170 lncRNA upstream 73902 16049120 ~ 16049354 (+) True G478821
TU544143 lncRNA upstream 112064 16008357 ~ 16011192 (+) True G478794
TU544265 lncRNA downstream 790 16166587 ~ 16167033 (+) True G478897
TU544325 lncRNA downstream 120105 16285902 ~ 16286361 (+) True G478957
TU544578 lncRNA downstream 130276 16296073 ~ 16296320 (+) True G479174
TU544698 lncRNA downstream 230868 16396665 ~ 16396875 (+) True G479278
TU544699 lncRNA downstream 231128 16396925 ~ 16397155 (+) True G479279
XM_036979450.1 mRNA upstream 239466 15832502 ~ 15883790 (+) False LOC110525313
XR_005052026.1 mRNA downstream 2598 16168395 ~ 16175015 (+) True LOC118964846
XM_036979466.1 mRNA downstream 471746 16637543 ~ 16654193 (+) False LOC110525319
XM_036979467.1 mRNA downstream 471747 16637544 ~ 16644582 (+) False LOC110525319
XM_036979465.1 mRNA downstream 473745 16639542 ~ 16654193 (+) True LOC110525319
XM_021605347.2 mRNA downstream 585210 16751007 ~ 16762323 (+) True slc2a6
TU541393 other upstream 2107692 13997084 ~ 14015564 (+) True G476248
TU541379 other upstream 2137997 13984840 ~ 13985259 (+) True G476234
TU540778 other upstream 2809287 13313679 ~ 13313969 (+) True G475692
TU539960 other upstream 3409958 12712306 ~ 12713298 (+) True G474949
TU539852 other upstream 3619137 12503760 ~ 12504119 (+) True G474851
TU544659 other downstream 193619 16359416 ~ 16359751 (+) True G479239
TU545301 other downstream 813385 16979182 ~ 16982220 (+) True traf1
TU545405 other downstream 935189 17100986 ~ 17107427 (+) True dab2ipa
TU545623 other downstream 1154977 17320774 ~ 17321165 (+) True G480128
TU545733 other downstream 1278956 17444753 ~ 17445931 (+) True G480219

Expression Profile